C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: protein phosphatase, Mg2+/Mn2+ dependent, 1M
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000164088 PPM1M 9606 + 3:52245793-52250597 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000296487 PPM1M-001 52246170-52250595 protein_coding
  ENST00000323588 PPM1M-201 52245793-52250595 protein_coding
  ENST00000409502 PPM1M-004 52246209-52250597 protein_coding
  ENST00000443681 PPM1M-007 52248961-52249790 protein_coding
  ENST00000457454 PPM1M-006 52245886-52249063 protein_coding
  ENST00000467471 PPM1M-002 52245898-52250595 retained_intron
  ENST00000472955 PPM1M-008 52247327-52248244 retained_intron
  ENST00000482724 PPM1M-005 52248426-52250595 retained_intron
  ENST00000489606 PPM1M-003 52246446-52250597 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000296487ENST00000323588ENST00000409502ENST00000443681ENST00000457454ENST00000467471ENST00000472955ENST00000482724ENST00000489606
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000296487 N/A 1.960±0.00 N/A N/A 0.574±0.00 N/A N/A 1.277±0.00 N/A 1.039±0.00 0.330±0.00 N/A N/A 1.076±0.00
ENST00000323588 7.180±0.00 5.417±0.00 1.021±0.00 3.988±0.00 4.719±3.44 14.753±0.00 1.660±0.00 5.708±0.00 1.150±0.00 10.581±0.00 0.806±0.00 6.699±3.84 8.395±0.71 6.308±4.04
ENST00000409502 N/A 2.717±0.00 N/A N/A 3.012±0.00 N/A N/A 1.424±0.00 N/A 1.484±0.00 N/A 3.243±0.00 2.560±0.00 N/A
ENST00000443681 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.565±0.00 N/A 4.959±0.00
ENST00000457454 N/A N/A N/A N/A N/A N/A N/A N/A 1.108±0.00 N/A N/A 2.210±0.00 N/A 4.242±0.00
ENST00000467471 N/A N/A N/A 1.310±0.00 N/A N/A 0.762±0.01 N/A N/A N/A N/A N/A N/A N/A
ENST00000472955 N/A N/A N/A 2.301±0.00 N/A 0.856±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000482724 N/A 4.391±0.00 N/A N/A N/A N/A N/A N/A N/A 1.905±0.00 1.517±0.00 5.153±0.03 N/A N/A
ENST00000489606 N/A 1.702±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00087C CIL_00087C_0001 VISTA 3:51705330-52307529
CIL_0008NT CIL_0008NT_0001 VISTA 3:51738719-52342071
CIL_0007WP CIL_0007WP_0001 VISTA 3:52127966-52731115

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003824 IEA catalytic activity
GO:0004721 IEA phosphoprotein phosphatase activity
GO:0005634 ISS nucleus
GO:0006470 ISS protein dephosphorylation
GO:0008152 IEA metabolic process
GO:0008420 ISS CTD phosphatase activity
GO:0030145 ISS manganese ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000020253 Ppm1m protein phosphatase 1M protein_coding Mus_musculus

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