C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ring finger protein 180
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000164197 RNF180 9606 + 5:64165844-64372869 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000296615 RNF180-002 64165844-64217786 protein_coding
  ENST00000389100 RNF180-001 64165882-64372869 protein_coding
  ENST00000504296 RNF180-003 64166162-64213647 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000296615ENST00000389100
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000296615 N/A N/A 3.123±0.00 N/A 2.403±0.00 0.858±0.00 N/A 1.704±0.00 N/A N/A 0.654±0.54 0.708±0.55 0.179±0.00 N/A
ENST00000389100 1.019±0.00 1.384±0.00 1.705±0.00 1.706±0.44 0.910±0.38 1.718±0.00 0.865±0.14 1.438±0.65 1.403±0.81 1.404±0.00 0.186±0.03 0.628±0.50 0.097±0.02 1.006±0.49

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ZN CIL_0007ZN_0001 VISTA 5:63585672-64187029

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000209 IEA protein polyubiquitination
GO:0004842 IEA ubiquitin-protein transferase activity
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0008270 IEA zinc ion binding
GO:0016021 IEA integral component of membrane
GO:0016874 IEA ligase activity
GO:0030534 IEA adult behavior
GO:0031227 IEA intrinsic component of endoplasmic reticulum membrane
GO:0031398 IEA positive regulation of protein ubiquitination
GO:0031624 IEA ubiquitin conjugating enzyme binding
GO:0032436 IEA positive regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0042415 IEA norepinephrine metabolic process
GO:0042428 IEA serotonin metabolic process
GO:0046872 IEA metal ion binding
GO:0050790 IEA regulation of catalytic activity
GO:1901360 IEA organic cyclic compound metabolic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000057101 rnf180 ring finger protein 180 protein_coding Danio_rerio
ENSDARG00000073720 RNF180 (2 of 2) ring finger protein 180 protein_coding Danio_rerio
ENSMUSG00000021720 Rnf180 ring finger protein 180 protein_coding Mus_musculus

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