C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

CIL_0007ZN_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
mm5 VISTA 9606 5:63585672-64187029
GeneTranscriptPositionBiotype
ENSG00000164197 (RNF180)
ring finger protein 180
ENST00000296615 (RNF180-002) 64165844-64217786 protein_coding
ENST00000389100 (RNF180-001) 64165882-64372869 protein_coding
ENST00000504296 (RNF180-003) 64166162-64213647 protein_coding
ENSG00000178394 (HTR1A)
5-hydroxytryptamine (serotonin) receptor 1A, G protein-coupled
ENST00000323865 (HTR1A-001) 63960356-63962133 protein_coding
ENST00000506598 (HTR1A-003) 63961595-63962507 protein_coding
ENSG00000248285 (RP11-158J3.2)
ENST00000502882 (RP11-158J3.2-001) 63957893-63981043 sense_overlapping
CIL_0007ZN_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
mm5 VISTA 10090 13:105237275-105839272
GeneTranscriptPositionBiotype
ENSMUSG00000021720 (Rnf180)
ring finger protein 180
ENSMUST00000069686 (Rnf180-201) 105149352-105271039 protein_coding
ENSMUSG00000021721 (Htr1a)
5-hydroxytryptamine (serotonin) receptor 1A
ENSMUST00000022235 (Htr1a-201) 105443693-105448133 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007ZN_0001ENSG00000164197ENST00000296615ENST00000389100ENST00000504296ENSG00000178394ENST00000323865ENST00000506598ENSG00000248285ENST00000502882CIL_0007ZN_0002ENSMUSG00000021720ENSMUST00000069686ENSMUSG00000021721ENSMUST00000022235
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007ZN_0001ENSG00000164197ENST00000296615ENST00000389100ENSG00000178394ENST00000323865ENST00000506598ENSG00000248285ENST00000502882CIL_0007ZN_0002ENSMUSG00000021720ENSMUST00000069686ENSMUSG00000021721ENSMUST00000022235
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000164197 ENST00000296615 N/A N/A 3.123±0.00 N/A 2.403±0.00 0.858±0.00 N/A 1.704±0.00 N/A N/A 0.654±0.54 0.708±0.55 0.179±0.00 N/A
ENST00000389100 1.019±0.00 1.384±0.00 1.705±0.00 1.706±0.44 0.910±0.38 1.718±0.00 0.865±0.14 1.438±0.65 1.403±0.81 1.404±0.00 0.186±0.03 0.628±0.50 0.097±0.02 1.006±0.49
ENST00000504296 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000178394 ENST00000323865 N/A N/A N/A 0.647±0.00 N/A N/A N/A N/A N/A N/A N/A 0.110±0.06 N/A N/A
ENST00000506598 N/A N/A N/A N/A N/A N/A N/A 0.061±0.00 N/A N/A N/A 0.080±0.00 N/A N/A
ENSG00000248285 ENST00000502882 N/A 0.069±0.00 N/A N/A 0.068±0.00 N/A 0.060±0.00 0.271±0.00 0.181±0.00 N/A N/A 1.944±0.00 N/A 0.853±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000021720 ENSMUST00000069686 0.406±0.08 N/A 0.379±0.00 2.643±0.52 0.744±0.20 1.142±0.68 0.150±0.02 0.392±0.04 0.085±0.03 0.846±0.21 0.058±0.03 3.496±1.31 0.325±0.10 3.201±0.00
ENSMUSG00000021721 ENSMUST00000022235 N/A N/A 0.002±0.00 0.922±0.33 N/A N/A N/A N/A 0.003±0.00 N/A N/A N/A N/A 0.020±0.00

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