C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RAD21 homolog (S. pombe)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000164754 RAD21 9606 - 8:116845935-116874866 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000297338 RAD21-001 116845935-116874866 protein_coding
  ENST00000517485 RAD21-005 116857279-116874528 protein_coding
  ENST00000517749 RAD21-009 116847227-116849483 protein_coding
  ENST00000518055 RAD21-010 116847334-116852251 protein_coding
  ENST00000519469 RAD21-008 116863117-116866991 retained_intron
  ENST00000519837 RAD21-011 116861843-116874360 protein_coding
  ENST00000520992 RAD21-006 116857271-116874424 protein_coding
  ENST00000522699 RAD21-004 116861854-116874360 protein_coding
  ENST00000523547 RAD21-007 116857289-116874328 processed_transcript
  ENST00000523986 RAD21-003 116846905-116852252 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonHeartKidneyLiverLungMuscleOvaryENST00000297338ENST00000520992
Transcript ID Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary
ENST00000297338 18.267±8.52 17.862±10.14 8.021±0.00 7.907±4.55 9.509±0.00 8.649±0.74 20.181±6.04 10.686±0.00 14.322±0.00
ENST00000520992 N/A N/A N/A 19.112±0.00 N/A N/A N/A N/A 81.787±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005RV CIL_0005RV_0001 CGP 8:116642130-116849463
CIL_0004H8 CIL_0004H8_0001 CGP 8:116766503-116874866
CIL_0005RT CIL_0005RT_0001 CGP 8:116845935-116944487

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000228 IEA nuclear chromosome
GO:0000278 TAS mitotic cell cycle
GO:0000775 TAS chromosome, centromeric region
GO:0000785 IEA chromatin
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005694 TAS chromosome
GO:0005829 TAS cytosol
GO:0006302 TAS double-strand break repair
GO:0006310 TAS DNA recombination
GO:0006357 IDA regulation of transcription from RNA polymerase II promoter
GO:0006915 IEA apoptotic process
GO:0007059 IEA chromosome segregation
GO:0007067 IEA mitotic nuclear division
GO:0007131 TAS reciprocal meiotic recombination
GO:0008278 TAS cohesin complex
GO:0016020 IDA membrane
GO:0034991 IEA nuclear meiotic cohesin complex
GO:0071168 IMP protein localization to chromatin

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000006092 rad21a RAD21 homolog (S. pombe) a protein_coding Danio_rerio
ENSDARG00000035655 rad21b RAD21 homolog (S. pombe) b protein_coding Danio_rerio
ENSDARG00000086515 rad21a RAD21 homolog (S. pombe) a protein_coding Danio_rerio
ENSMUSG00000022314 Rad21 RAD21 homolog (S. pombe) protein_coding Mus_musculus

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