C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAD21 homolog (S. pombe)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000297338 RAD21-001 ENSG00000164754 9606 - 8:116845935-116874866 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonHeartKidneyLiverLungMuscleOvaryENST00000297338
Transcript ID Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary
ENST00000297338 18.267±8.52 17.862±10.14 8.021±0.00 7.907±4.55 9.509±0.00 8.649±0.74 20.181±6.04 10.686±0.00 14.322±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005RV CIL_0005RV_0001 CGP 8:116642130-116849463
CIL_0004H8 CIL_0004H8_0001 CGP 8:116766503-116874866
CIL_0005RT CIL_0005RT_0001 CGP 8:116845935-116944487

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000228 IEA nuclear chromosome
GO:0000278 TAS mitotic cell cycle
GO:0000775 TAS chromosome, centromeric region
GO:0000785 IEA chromatin
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005694 TAS chromosome
GO:0005829 TAS cytosol
GO:0006302 TAS double-strand break repair
GO:0006310 TAS DNA recombination
GO:0006357 IDA regulation of transcription from RNA polymerase II promoter
GO:0006915 IEA apoptotic process
GO:0007059 IEA chromosome segregation
GO:0007067 IEA mitotic nuclear division
GO:0007131 TAS reciprocal meiotic recombination
GO:0008278 TAS cohesin complex
GO:0016020 IDA membrane
GO:0034991 IEA nuclear meiotic cohesin complex
GO:0071168 IMP protein localization to chromatin

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000022927 Rad21-201 protein_coding Mus_musculus 0 2721
ENSMUST00000176697 Gm8473-001 processed_pseudogene Mus_musculus 0 1160

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