C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: somatomedin B and thrombospondin, type 1 domain containing
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000164764 SBSPON 9606 - 8:73064540-73124088 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000297354 SBSPON-001 73064540-73093272 protein_coding
  ENST00000519697 SBSPON-002 73066532-73124088 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000297354ENST00000519697
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000297354 0.889±0.00 4.891±0.00 0.243±0.00 0.070±0.00 0.261±0.00 0.803±0.58 0.207±0.10 2.401±2.31 3.427±3.40 1.942±0.00 0.154±0.14 1.617±1.87 1.350±0.59 1.112±0.59
ENST00000519697 N/A N/A N/A N/A 0.654±0.00 0.842±0.44 N/A 3.666±0.00 N/A 1.247±0.00 0.083±0.07 0.084±0.00 2.765±1.76 5.003±0.46

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000132 CIL_000132_0001 CGP 8:73008864-73124088
CIL_0001DK CIL_0001DK_0001 CGP 8:73064540-73259502

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005044 IEA scavenger receptor activity
GO:0005578 IEA proteinaceous extracellular matrix
GO:0006898 IEA receptor-mediated endocytosis
GO:0006955 IEA immune response
GO:0030247 IEA polysaccharide binding
GO:0031012 IDA extracellular matrix

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000079897 SBSPON somatomedin B and thrombospondin, type 1 domain containing protein_coding Danio_rerio
ENSMUSG00000032719 Sbspon somatomedin B and thrombospondin, type 1 domain containing protein_coding Mus_musculus

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