C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: nuclear factor, interleukin 3 regulated
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000165030 NFIL3 9606 - 9:91409045-91423862 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000297689 NFIL3-001 91409045-91423862 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000297689
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000297689 26.364±0.00 10.361±0.00 2.386±0.00 7.598±6.53 9.586±0.29 20.528±18.26 6.781±6.46 21.841±0.00 13.241±7.56 24.948±23.36 58.415±0.00 22.925±12.84 18.317±4.29 18.549±3.89

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00068X CIL_00068X_0001 CGP 9:91213815-91423862
CIL_00068R CIL_00068R_0001 CGP 9:91409045-91950162

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IMP negative regulation of transcription from RNA polymerase II promoter
GO:0000977 IDA RNA polymerase II regulatory region sequence-specific DNA binding
GO:0000979 IEA RNA polymerase II core promoter sequence-specific DNA binding
GO:0001078 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription
GO:0003677 TAS DNA binding
GO:0003700 TAS:IEA sequence-specific DNA binding transcription factor activity
GO:0003714 TAS transcription corepressor activity
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006366 TAS:IEA transcription from RNA polymerase II promoter
GO:0006955 TAS:IEA immune response
GO:0007623 IEA circadian rhythm
GO:0010628 IEA positive regulation of gene expression
GO:0043565 IEA sequence-specific DNA binding
GO:0071353 IEA cellular response to interleukin-4

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000042977 nfil3 nuclear factor, interleukin 3 regulated protein_coding Danio_rerio
ENSMUSG00000056749 Nfil3 nuclear factor, interleukin 3, regulated protein_coding Mus_musculus

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