C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: TATA box binding protein (TBP)-associated factor, RNA polymerase I, D, 41kDa
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000166012 TAF1D 9606 - 11:93729948-93784391 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000323981 TAF1D-002 93729948-93741494 nonsense_mediated_decay
  ENST00000393259 TAF1D-014 93730281-93736741 nonsense_mediated_decay
  ENST00000448108 TAF1D-001 93735567-93741945 protein_coding
  ENST00000525928 TAF1D-020 93730283-93734661 retained_intron
  ENST00000526015 TAF1D-004 93730194-93741493 nonsense_mediated_decay
  ENST00000527068 TAF1D-010 93733305-93738292 retained_intron
  ENST00000527169 TAF1D-003 93731146-93741479 nonsense_mediated_decay
  ENST00000527690 TAF1D-024 93739281-93784391 protein_coding
  ENST00000528734 TAF1D-017 93735915-93736967 retained_intron
  ENST00000529435 TAF1D-016 93730354-93735238 retained_intron
  ENST00000529508 TAF1D-006 93738967-93741494 retained_intron
  ENST00000529794 TAF1D-011 93732977-93736806 retained_intron
  ENST00000529900 TAF1D-022 93730667-93732268 retained_intron
  ENST00000530089 TAF1D-019 93731161-93736157 processed_transcript
  ENST00000530769 TAF1D-005 93730282-93735848 retained_intron
  ENST00000532235 TAF1D-009 93737156-93741476 processed_transcript
  ENST00000532455 TAF1D-007 93738109-93741495 protein_coding
  ENST00000533794 TAF1D-013 93732800-93736239 nonsense_mediated_decay
  ENST00000534079 TAF1D-021 93730200-93732501 retained_intron
  ENST00000534770 TAF1D-008 93737089-93741480 nonsense_mediated_decay
  ENST00000540232 TAF1D-023 93730682-93736289 nonsense_mediated_decay
  ENST00000546088 TAF1D-015 93730272-93736175 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonLiverLungMuscleOvaryPlacentaTestisENST00000323981ENST00000526015ENST00000530769ENST00000534079
Transcript ID Adipose Adrenal Brain Breast Colon Liver Lung Muscle Ovary Placenta Testis
ENST00000323981 N/A N/A N/A 11.283±0.00 14.054±0.00 11.758±0.00 14.929±0.00 N/A 11.939±2.32 N/A N/A
ENST00000526015 17.161±0.00 23.177±0.00 11.592±0.00 31.019±0.00 18.523±0.00 N/A 16.103±0.00 11.376±0.00 32.368±0.00 9.143±0.92 15.461±0.00
ENST00000530769 N/A 7.960±0.00 4.098±0.00 8.538±0.00 N/A N/A 9.176±2.72 N/A 11.559±0.91 N/A N/A
ENST00000534079 N/A N/A 64.136±29.45 N/A N/A N/A N/A 28.059±0.00 N/A N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005668 IEA RNA polymerase transcription factor SL1 complex
GO:0005815 IDA microtubule organizing center
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006360 TAS transcription from RNA polymerase I promoter
GO:0006361 TAS transcription initiation from RNA polymerase I promoter
GO:0006362 TAS transcription elongation from RNA polymerase I promoter
GO:0006363 TAS termination of RNA polymerase I transcription
GO:0010467 TAS gene expression

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000031939 Taf1d TATA box binding protein (Tbp)-associated factor, RNA polymerase I, D protein_coding Mus_musculus

Loading