C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TATA box binding protein (TBP)-associated factor, RNA polymerase I, D, 41kDa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000323981 TAF1D-002 ENSG00000166012 9606 - 11:93729948-93741494 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonLiverLungOvaryENST00000323981
Transcript ID Breast Colon Liver Lung Ovary
ENST00000323981 11.283±0.00 14.054±0.00 11.758±0.00 14.929±0.00 11.939±2.32

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005815 IDA microtubule organizing center
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006360 TAS transcription from RNA polymerase I promoter
GO:0006361 TAS transcription initiation from RNA polymerase I promoter
GO:0006362 TAS transcription elongation from RNA polymerase I promoter
GO:0006363 TAS termination of RNA polymerase I transcription
GO:0010467 TAS gene expression

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000034415 Taf1d-201 protein_coding Mus_musculus 0 326
ENSMUST00000164079 Taf1d-202 protein_coding Mus_musculus 0 326
ENSMUST00000122240 Gm13487-001 processed_pseudogene Mus_musculus 0 315
ENSMUST00000139730 Top2a-002 processed_transcript Mus_musculus 1e-30 139

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