C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: deleted in primary ciliary dyskinesia homolog (mouse)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000166171 DPCD 9606 + 10:101570560-101609668 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000370147 DPCD-002 101588325-101609447 protein_coding
  ENST00000370151 DPCD-001 101588288-101609668 protein_coding
  ENST00000434727 DPCD-004 101594702-101609439 protein_coding
  ENST00000470165 DPCD-003 101570560-101596651 processed_transcript
  ENST00000475443 DPCD-005 101600739-101609661 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000370147ENST00000370151
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000370147 3.751±0.00 N/A N/A 13.109±0.00 N/A N/A 2.378±0.00 N/A N/A N/A N/A 13.294±11.28 12.666±0.00 60.572±27.80
ENST00000370151 3.197±0.00 4.899±0.00 1.386±0.00 10.807±1.22 4.635±3.62 6.184±4.73 11.597±0.00 21.615±0.00 3.033±0.89 7.381±6.34 4.289±0.00 17.216±9.01 11.482±1.59 106.313±37.32

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ZR CIL_0007ZR_0001 VISTA 10:101034855-101635629
CIL_00089J CIL_00089J_0001 VISTA 10:101185253-101786853
CIL_000942 CIL_000942_0001 VISTA 10:101206892-101808215
CIL_00099F CIL_00099F_0001 VISTA 10:101467436-102068636
CIL_00099E CIL_00099E_0001 VISTA 10:101480423-102081273
CIL_00007N CIL_00007N_0002 CGP 10:101570560-101609668

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003351 IEA epithelial cilium movement
GO:0005634 IDA nucleus
GO:0007283 IEA spermatogenesis
GO:0007368 IEA determination of left/right symmetry
GO:0021591 IEA ventricular system development
GO:0021670 IEA lateral ventricle development
GO:0021678 IEA third ventricle development
GO:0030317 IEA sperm motility
GO:0060972 IEA left/right pattern formation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000060501 dpcd deleted in a mouse model of primary ciliary dyskinesia protein_coding Danio_rerio
ENSMUSG00000041035 Dpcd deleted in primary ciliary dyskinesia protein_coding Mus_musculus

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