C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: deleted in primary ciliary dyskinesia
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000041035 Dpcd 10090 + 19:45560615-45579763 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000047057 Dpcd-201 45560615-45578279 protein_coding
  ENSMUST00000161373 Dpcd-001 45578277-45579763 antisense

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000047057ENSMUST00000161373
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000047057 6.042±0.26 9.375±2.24 11.298±2.45 4.239±0.00 N/A 3.600±0.16 7.616±0.94 6.145±2.56 N/A 4.951±0.30 14.704±1.68 5.959±1.43 13.113±3.06
ENSMUST00000161373 23.435±4.06 13.793±1.18 13.520±1.82 33.834±6.37 20.262±4.93 14.473±2.48 13.594±2.31 10.162±1.83 31.654±4.76 12.173±1.10 30.628±10.19 7.746±4.77 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ZR CIL_0007ZR_0002 VISTA 19:45042853-45643685
CIL_00089J CIL_00089J_0002 VISTA 19:45175437-45776961
CIL_000942 CIL_000942_0002 VISTA 19:45193585-45794869
CIL_00099F CIL_00099F_0002 VISTA 19:45434459-46035623
CIL_00099E CIL_00099E_0002 VISTA 19:45446900-46047683

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003351 IMP epithelial cilium movement
GO:0003674 ND molecular_function
GO:0005634 IEA nucleus
GO:0007283 IMP spermatogenesis
GO:0007368 IMP determination of left/right symmetry
GO:0021591 IMP ventricular system development
GO:0021670 IMP lateral ventricle development
GO:0021678 IMP third ventricle development
GO:0030317 IMP sperm motility
GO:0060972 IMP left/right pattern formation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000060501 dpcd deleted in a mouse model of primary ciliary dyskinesia protein_coding Danio_rerio
ENSG00000166171 DPCD deleted in primary ciliary dyskinesia homolog (mouse) protein_coding Homo_sapiens

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