C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: centromere protein N
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000166451 CENPN 9606 + 16:81006498-81033114 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000299572 CENPN-003 81006552-81022885 protein_coding
  ENST00000305850 CENPN-001 81006498-81029322 protein_coding
  ENST00000393335 CENPN-002 81007214-81033114 protein_coding
  ENST00000428963 CENPN-005 81007244-81028660 protein_coding
  ENST00000439957 CENPN-004 81007207-81029309 protein_coding
  ENST00000562943 CENPN-009 81017755-81022874 protein_coding
  ENST00000564669 CENPN-007 81007257-81020276 protein_coding
  ENST00000568445 CENPN-008 81007263-81017836 nonsense_mediated_decay
  ENST00000569461 CENPN-006 81007223-81020146 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENST00000299572ENST00000305850ENST00000439957
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENST00000299572 N/A N/A N/A N/A 3.280±0.00 N/A N/A 0.644±0.00 1.602±0.00 4.405±0.00 3.268±0.39 18.143±0.00
ENST00000305850 1.344±0.00 1.607±0.00 1.189±0.00 1.730±0.00 N/A 2.065±1.61 2.652±0.00 1.845±0.00 N/A 2.174±1.05 3.228±0.00 N/A
ENST00000439957 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.321±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001PZ CIL_0001PZ_0001 CGP 16:80597906-81020270
CIL_0004YC CIL_0004YC_0002 CGP 16:80966448-81033114
CIL_0001QV CIL_0001QV_0001 CGP 16:81006498-81047358

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000278 TAS mitotic cell cycle
GO:0000775 IEA chromosome, centromeric region
GO:0000776 IEA kinetochore
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005829 TAS cytosol
GO:0006334 TAS nucleosome assembly
GO:0007059 IEA chromosome segregation
GO:0007067 IEA mitotic nuclear division
GO:0034080 TAS CENP-A containing nucleosome assembly
GO:0034508 IEA centromere complex assembly

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000043640 cenpn centromere protein N protein_coding Danio_rerio
ENSMUSG00000031756 Cenpn centromere protein N protein_coding Mus_musculus

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