C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: C-type lectin domain family 4, member E
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000166523 CLEC4E 9606 - 12:8533305-8540963 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000299663 CLEC4E-001 8533305-8540963 protein_coding
  ENST00000446457 CLEC4E-004 8534484-8540877 protein_coding
  ENST00000446809 CLEC4E-003 8538954-8540901 retained_intron
  ENST00000450725 CLEC4E-002 8534763-8540905 nonsense_mediated_decay
  ENST00000537698 CLEC4E-006 8534581-8539255 protein_coding
  ENST00000545274 CLEC4E-005 8534509-8540873 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000299663ENST00000446809ENST00000450725ENST00000537698ENST00000545274
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000299663 1.235±0.00 0.229±0.00 N/A 0.039±0.00 0.028±0.00 N/A 0.165±0.00 0.492±0.00 0.219±0.12 0.395±0.07 N/A 0.250±0.10 0.334±0.07 0.261±0.00
ENST00000446809 N/A N/A N/A N/A 0.726±0.00 N/A N/A N/A N/A N/A N/A 0.506±0.00 N/A N/A
ENST00000450725 N/A N/A N/A N/A 0.334±0.00 N/A N/A N/A N/A N/A N/A N/A 0.380±0.00 0.230±0.00
ENST00000537698 4.686±0.00 N/A 1.606±0.00 N/A 0.941±0.70 N/A 0.668±0.45 2.692±0.00 0.777±0.00 3.593±0.59 N/A 1.686±1.21 1.048±0.33 0.926±0.39
ENST00000545274 11.413±0.00 0.457±0.00 0.128±0.00 0.132±0.00 0.361±0.00 2.553±0.00 0.984±0.00 4.712±0.00 2.812±0.00 4.991±0.00 0.755±0.00 0.311±0.06 0.973±0.43 0.712±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003XR CIL_0003XR_000B CGP 12:8509475-8540963

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004872 IEA receptor activity
GO:0005515 IEA protein binding
GO:0006955 IEA immune response
GO:0016021 IEA integral component of membrane
GO:0030246 IEA carbohydrate binding
GO:0050715 IEA positive regulation of cytokine secretion

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000008075 illr4 immune-related, lectin-like receptor 4 protein_coding Danio_rerio
ENSDARG00000008182 si:ch73-111e15.1 si:ch73-111e15.1 protein_coding Danio_rerio
ENSDARG00000018327 illr3 immune-related, lectin-like receptor 3 protein_coding Danio_rerio
ENSDARG00000025150 si:dkey-181c13.1 si:dkey-181c13.1 protein_coding Danio_rerio
ENSDARG00000026805 CR847844.1 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000029461 cd209 CD209 molecule protein_coding Danio_rerio
ENSDARG00000043894 si:ch211-214k5.3 si:ch211-214k5.3 protein_coding Danio_rerio
ENSDARG00000056379 si:ch211-154o6.6 si:ch211-154o6.6 protein_coding Danio_rerio
ENSDARG00000057090 CR847844.2 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000059254 illr1 immune-related, lectin-like receptor 1 protein_coding Danio_rerio
ENSDARG00000069323 si:ch73-122g19.1 si:ch73-122g19.1 protein_coding Danio_rerio
ENSDARG00000087245 CR847844.3 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000088219 CR847844.4 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000088614 BX936386.1 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000088727 CR847844.6 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000089377 si:ch211-232p21.6 si:ch211-232p21.6 protein_coding Danio_rerio
ENSDARG00000092749 si:ch211-133n4.12 si:ch211-133n4.12 protein_coding Danio_rerio
ENSDARG00000094796 si:ch211-133n4.11 si:ch211-133n4.11 protein_coding Danio_rerio
ENSDARG00000094882 illr2 immune-related, lectin-like receptor 2 protein_coding Danio_rerio
ENSDARG00000095424 si:ch211-133n4.7 si:ch211-133n4.7 protein_coding Danio_rerio
ENSDARG00000096624 si:dkey-187i8.2 si:dkey-187i8.2 protein_coding Danio_rerio
ENSMUSG00000030142 Clec4e C-type lectin domain family 4, member e protein_coding Mus_musculus

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