C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: C-type lectin domain family 4, member e
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000030142 Clec4e 10090 - 6:123281789-123289870 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000032239 Clec4e-001 123281789-123289870 protein_coding
  ENSMUST00000175954 Clec4e-005 123287777-123289870 processed_transcript
  ENSMUST00000175995 Clec4e-003 123282145-123289870 retained_intron
  ENSMUST00000176096 Clec4e-007 123283694-123289866 nonsense_mediated_decay
  ENSMUST00000176443 Clec4e-004 123281949-123289869 retained_intron
  ENSMUST00000176831 Clec4e-002 123282668-123289870 retained_intron
  ENSMUST00000177367 Clec4e-006 123283491-123289870 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000032239ENSMUST00000175995ENSMUST00000176443ENSMUST00000176831ENSMUST00000177367
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000032239 0.113±0.06 N/A N/A N/A 0.120±0.00 N/A 0.024±0.00 N/A 0.237±0.11 0.410±0.16 N/A 0.107±0.07 0.070±0.03 0.012±0.00
ENSMUST00000175995 0.088±0.00 0.076±0.00 0.023±0.01 0.003±0.00 0.103±0.05 0.051±0.00 0.029±0.01 0.028±0.01 0.161±0.10 0.112±0.00 0.019±0.00 0.121±0.05 0.069±0.05 N/A
ENSMUST00000176443 N/A N/A N/A N/A N/A N/A 0.007±0.00 N/A 0.035±0.01 0.097±0.00 N/A N/A N/A N/A
ENSMUST00000176831 0.029±0.01 0.044±0.01 0.005±0.00 N/A 0.025±0.00 N/A 0.005±0.00 N/A 0.098±0.03 0.094±0.00 N/A 0.034±0.02 0.018±0.01 N/A
ENSMUST00000177367 N/A N/A N/A N/A 0.208±0.00 N/A N/A N/A N/A N/A 0.031±0.00 N/A 0.114±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003XR CIL_0003XR_000E CGP 6:123262107-123289870

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004872 IDA receptor activity
GO:0005515 IPI protein binding
GO:0006955 IMP immune response
GO:0016021 IEA integral component of membrane
GO:0030246 IEA carbohydrate binding
GO:0050715 IDA positive regulation of cytokine secretion

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000008075 illr4 immune-related, lectin-like receptor 4 protein_coding Danio_rerio
ENSDARG00000008182 si:ch73-111e15.1 si:ch73-111e15.1 protein_coding Danio_rerio
ENSDARG00000018327 illr3 immune-related, lectin-like receptor 3 protein_coding Danio_rerio
ENSDARG00000025150 si:dkey-181c13.1 si:dkey-181c13.1 protein_coding Danio_rerio
ENSDARG00000026805 CR847844.1 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000029461 cd209 CD209 molecule protein_coding Danio_rerio
ENSDARG00000043894 si:ch211-214k5.3 si:ch211-214k5.3 protein_coding Danio_rerio
ENSDARG00000056379 si:ch211-154o6.6 si:ch211-154o6.6 protein_coding Danio_rerio
ENSDARG00000057090 CR847844.2 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000059254 illr1 immune-related, lectin-like receptor 1 protein_coding Danio_rerio
ENSDARG00000069323 si:ch73-122g19.1 si:ch73-122g19.1 protein_coding Danio_rerio
ENSDARG00000087245 CR847844.3 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000088219 CR847844.4 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000088614 BX936386.1 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000088727 CR847844.6 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000089377 si:ch211-232p21.6 si:ch211-232p21.6 protein_coding Danio_rerio
ENSDARG00000092749 si:ch211-133n4.12 si:ch211-133n4.12 protein_coding Danio_rerio
ENSDARG00000094796 si:ch211-133n4.11 si:ch211-133n4.11 protein_coding Danio_rerio
ENSDARG00000094882 illr2 immune-related, lectin-like receptor 2 protein_coding Danio_rerio
ENSDARG00000095424 si:ch211-133n4.7 si:ch211-133n4.7 protein_coding Danio_rerio
ENSDARG00000096624 si:dkey-187i8.2 si:dkey-187i8.2 protein_coding Danio_rerio
ENSG00000166523 CLEC4E C-type lectin domain family 4, member E protein_coding Homo_sapiens

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