C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: protein associated with topoisomerase II homolog 1 (yeast)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000166889 PATL1 9606 - 11:59636716-59668980 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000300146 PATL1-001 59636716-59668980 protein_coding
  ENST00000531919 PATL1-004 59642674-59647886 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000300146
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000300146 8.611±0.00 6.805±0.00 0.515±0.00 2.528±2.05 4.403±1.38 4.676±1.77 3.886±2.99 4.297±3.11 4.126±3.10 12.314±0.00 11.488±8.55 12.270±2.15 9.001±0.42 8.279±0.02

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000288 TAS nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000290 IDA deadenylation-dependent decapping of nuclear-transcribed mRNA
GO:0000932 IDA cytoplasmic mRNA processing body
GO:0003723 IDA RNA binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005829 TAS cytosol
GO:0008266 IDA poly(U) RNA binding
GO:0010467 TAS gene expression
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0030014 IDA CCR4-NOT complex
GO:0033962 IDA cytoplasmic mRNA processing body assembly
GO:0034046 IDA poly(G) binding
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0043928 TAS exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000017423 patl1 protein associated with topoisomerase II homolog 1 (yeast) protein_coding Danio_rerio
ENSMUSG00000046139 Patl1 protein associated with topoisomerase II homolog 1 (yeast) protein_coding Mus_musculus

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