C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: protein associated with topoisomerase II homolog 1 (yeast)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000046139 Patl1 10090 + 19:11912399-11945096 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000061618 Patl1-201 11912399-11945096 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000061618
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000061618 5.009±1.65 10.369±1.62 4.784±0.14 8.812±3.95 9.624±0.66 5.357±0.95 6.414±1.24 6.458±1.33 5.603±1.66 8.440±0.65 4.199±1.18 10.015±3.34 10.571±3.83 2.767±1.14

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000290 ISS deadenylation-dependent decapping of nuclear-transcribed mRNA
GO:0000932 ISS cytoplasmic mRNA processing body
GO:0002151 ISO G-quadruplex RNA binding
GO:0003723 ISS RNA binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005737 ISO cytoplasm
GO:0008266 ISO poly(U) RNA binding
GO:0017148 ISO negative regulation of translation
GO:0030014 ISS CCR4-NOT complex
GO:0030371 ISO translation repressor activity
GO:0033962 ISS cytoplasmic mRNA processing body assembly
GO:0034046 ISO poly(G) binding
GO:0043231 IEA intracellular membrane-bounded organelle
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000017423 patl1 protein associated with topoisomerase II homolog 1 (yeast) protein_coding Danio_rerio
ENSG00000166889 PATL1 protein associated with topoisomerase II homolog 1 (yeast) protein_coding Homo_sapiens

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