C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: nudix (nucleoside diphosphate linked moiety X)-type motif 21
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000167005 NUDT21 9606 - 16:56429133-56452199 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000300291 NUDT21-001 56429133-56451375 protein_coding
  ENST00000563362 NUDT21-006 56439127-56439735 retained_intron
  ENST00000563860 NUDT21-007 56434327-56435212 retained_intron
  ENST00000566340 NUDT21-003 56434346-56452199 protein_coding
  ENST00000567110 NUDT21-004 56447648-56451351 retained_intron
  ENST00000568822 NUDT21-005 56439717-56449259 protein_coding
  ENST00000612596 NUDT21-008 56446504-56447047 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000300291ENST00000566340ENST00000568822
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000300291 10.531±0.00 9.931±0.00 3.975±0.00 18.660±3.19 8.861±0.43 9.888±1.00 5.918±2.32 10.637±6.79 7.081±3.53 7.247±1.09 3.635±1.90 12.959±4.29 9.834±2.03 14.988±2.62
ENST00000566340 N/A N/A N/A N/A N/A N/A N/A N/A N/A 13.006±0.00 5.516±2.75 N/A N/A 31.980±0.03
ENST00000568822 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 84.278±0.00 66.427±0.00 191.748±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00048T CIL_00048T_0001 CGP 16:56361452-56452199
CIL_00048W CIL_00048W_0001 CGP 16:56429133-56479100

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000398 TAS mRNA splicing, via spliceosome
GO:0003723 IDA RNA binding
GO:0003729 IEA:IDA mRNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005813 IDA centrosome
GO:0005849 IEA:IDA mRNA cleavage factor complex
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0006369 TAS termination of RNA polymerase II transcription
GO:0006378 IEA:IMP mRNA polyadenylation
GO:0006397 IDA mRNA processing
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0016787 IEA hydrolase activity
GO:0017091 IDA AU-rich element binding
GO:0031124 TAS mRNA 3'-end processing
GO:0042382 IDA paraspeckles
GO:0042803 IPI protein homodimerization activity
GO:0042826 IPI histone deacetylase binding
GO:0044822 IDA poly(A) RNA binding
GO:0051262 IDA protein tetramerization

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000003153 cpsf5 cleavage and polyadenylation specific factor 5 protein_coding Danio_rerio
ENSMUSG00000031754 Nudt21 nudix (nucleoside diphosphate linked moiety X)-type motif 21 protein_coding Mus_musculus

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