C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nudix (nucleoside diphosphate linked moiety X)-type motif 21
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000300291 NUDT21-001 ENSG00000167005 9606 - 16:56429133-56451375 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000300291
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000300291 10.531±0.00 9.931±0.00 3.975±0.00 18.660±3.19 8.861±0.43 9.888±1.00 5.918±2.32 10.637±6.79 7.081±3.53 7.247±1.09 3.635±1.90 12.959±4.29 9.834±2.03 14.988±2.62

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00048T CIL_00048T_0001 CGP 16:56361452-56452199
CIL_00048W CIL_00048W_0001 CGP 16:56429133-56479100

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000398 TAS mRNA splicing, via spliceosome
GO:0003723 IDA RNA binding
GO:0003729 IEA:IDA mRNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005813 IDA centrosome
GO:0005849 IEA:IDA mRNA cleavage factor complex
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0006369 TAS termination of RNA polymerase II transcription
GO:0006378 IEA:IMP mRNA polyadenylation
GO:0006397 IDA mRNA processing
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0016787 IEA hydrolase activity
GO:0017091 IDA AU-rich element binding
GO:0031124 TAS mRNA 3'-end processing
GO:0042382 IDA paraspeckles
GO:0042803 IPI protein homodimerization activity
GO:0042826 IPI histone deacetylase binding
GO:0044822 IDA poly(A) RNA binding
GO:0051262 IDA protein tetramerization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000034204 Nudt21-201 protein_coding Mus_musculus 0 1214
ENSMUST00000117148 Gm7488-001 processed_pseudogene Mus_musculus 0 1026
ENSMUST00000117753 Gm13732-001 processed_pseudogene Mus_musculus 0 418
ENSMUST00000120328 Gm13729-001 processed_pseudogene Mus_musculus 0 416
ENSMUST00000117471 Gm13728-001 processed_pseudogene Mus_musculus 0 409

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