C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tripartite motif containing 68
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000167333 TRIM68 9606 - 11:4598672-4608259 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000300747 TRIM68-001 4598672-4608259 protein_coding
  ENST00000526337 TRIM68-006 4600639-4608231 protein_coding
  ENST00000531101 TRIM68-003 4598780-4608204 nonsense_mediated_decay
  ENST00000531644 TRIM68-007 4601641-4608176 retained_intron
  ENST00000531717 TRIM68-009 4600800-4601565 retained_intron
  ENST00000532108 TRIM68-004 4601672-4608168 retained_intron
  ENST00000533021 TRIM68-008 4602244-4608138 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000300747ENST00000526337ENST00000531101ENST00000531644ENST00000532108ENST00000533021
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000300747 1.085±0.00 1.010±0.00 0.270±0.00 0.899±0.43 1.159±0.61 0.574±0.22 0.311±0.00 5.259±0.00 1.126±0.29 0.514±0.05 1.214±0.00 1.900±0.91 1.406±0.42 2.701±0.12
ENST00000526337 N/A N/A N/A 0.824±0.00 N/A N/A 0.520±0.00 N/A N/A N/A N/A 1.338±0.00 N/A 1.782±0.00
ENST00000531101 1.024±0.00 N/A N/A 1.269±0.00 N/A 1.032±0.68 1.128±0.00 0.174±0.00 N/A 0.719±0.00 N/A N/A 0.337±0.00 1.062±0.00
ENST00000531644 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.772±0.00 N/A 2.121±0.00 N/A
ENST00000532108 N/A N/A 0.355±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.591±0.00 N/A N/A
ENST00000533021 N/A N/A N/A N/A N/A N/A N/A 0.225±0.00 N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005LY CIL_0005LY_0001 CGP 11:4593750-4608259
CIL_00012P CIL_00012P_0001 CGP 11:4598672-4640838

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004842 IDA ubiquitin-protein transferase activity
GO:0005515 IEA protein binding
GO:0005622 IEA intracellular
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0005794 IDA Golgi apparatus
GO:0008270 IEA zinc ion binding
GO:0016874 IEA ligase activity
GO:0035035 IPI histone acetyltransferase binding
GO:0046872 IEA metal ion binding
GO:0050681 IPI androgen receptor binding
GO:0051865 IDA protein autoubiquitination
GO:0060765 IDA regulation of androgen receptor signaling pathway

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000073968 Trim68 tripartite motif-containing 68 protein_coding Mus_musculus

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