C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: chromatin licensing and DNA replication factor 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000167513 CDT1 9606 + 16:88803213-88809258 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000301019 CDT1-001 88803213-88809258 protein_coding
  ENST00000562747 CDT1-003 88804611-88806217 retained_intron
  ENST00000569140 CDT1-002 88805768-88807342 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000301019ENST00000562747ENST00000569140
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000301019 0.524±0.00 0.764±0.00 0.107±0.00 0.970±0.00 0.872±0.62 0.167±0.00 0.222±0.18 0.097±0.00 0.401±0.39 0.087±0.08 2.354±1.79 3.988±2.60 2.357±1.66
ENST00000562747 N/A N/A N/A 0.288±0.00 1.435±0.00 N/A N/A N/A N/A N/A N/A 2.504±0.00 N/A
ENST00000569140 N/A N/A 0.460±0.00 N/A N/A N/A N/A 0.107±0.00 0.530±0.13 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00091T CIL_00091T_0001 VISTA 16:88690989-89294615
CIL_00057I CIL_00057I_0002 CGP 16:88715343-88809258
CIL_00057H CIL_00057H_0002 CGP 16:88803213-88811944

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000076 IDA DNA replication checkpoint
GO:0000082 TAS G1/S transition of mitotic cell cycle
GO:0000083 TAS regulation of transcription involved in G1/S transition of mitotic cell cycle
GO:0000278 TAS mitotic cell cycle
GO:0003677 ISS DNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005829 TAS cytosol
GO:0006260 IEA DNA replication
GO:0030174 IDA regulation of DNA-dependent DNA replication initiation
GO:0033262 IEA regulation of nuclear cell cycle DNA replication

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000051854 cdt1 chromatin licensing and DNA replication factor 1 protein_coding Danio_rerio
ENSMUSG00000006585 Cdt1 chromatin licensing and DNA replication factor 1 protein_coding Mus_musculus

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