C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: transmembrane channel-like 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000167608 TMC4 9606 - 19:54160108-54173250 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000446291 TMC4-002 54168171-54172752 protein_coding
  ENST00000476013 TMC4-004 54164539-54171949 processed_transcript
  ENST00000495398 TMC4-006 54162226-54163267 retained_intron
  ENST00000497518 TMC4-008 54164552-54168482 retained_intron
  ENST00000611183 TMC4-009 54160108-54160649 retained_intron
  ENST00000613492 TMC4-003 54163108-54173160 processed_transcript
  ENST00000613723 TMC4-010 54160108-54164716 retained_intron
  ENST00000615945 TMC4-007 54160108-54160972 nonsense_mediated_decay
  ENST00000617472 TMC4-011 54160165-54173250 protein_coding
  ENST00000619895 TMC4-001 54160108-54173171 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000446291ENST00000476013ENST00000495398ENST00000611183ENST00000613492ENST00000613723ENST00000617472ENST00000619895
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000446291 N/A 0.968±0.00 N/A N/A N/A N/A 0.090±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000476013 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 39.967±0.00 6.952±0.00 N/A
ENST00000495398 N/A 0.658±0.00 N/A N/A N/A N/A 0.477±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000611183 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.390±0.00 N/A N/A N/A
ENST00000613492 N/A N/A N/A N/A N/A 3.123±0.00 N/A N/A 1.344±0.00 N/A N/A 2.603±0.00 N/A N/A
ENST00000613723 0.182±0.00 N/A N/A 0.125±0.00 N/A N/A 0.156±0.00 N/A 1.328±0.95 N/A 0.169±0.00 1.251±0.00 N/A 0.530±0.23
ENST00000617472 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.385±2.54 N/A N/A
ENST00000619895 N/A N/A 1.038±0.00 N/A 5.130±3.01 4.115±0.00 0.281±0.00 17.160±0.00 0.360±0.06 7.805±6.06 N/A 9.045±4.37 7.526±5.52 1.245±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001GV CIL_0001GV_0001 CGP 19:54155161-54173250
CIL_0001JN CIL_0001JN_0001 CGP 19:54160108-54189882

Gene Ontology
GO IDEvidence TypeGO Description
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000031757 tmc4 transmembrane channel-like 4 protein_coding Danio_rerio
ENSMUSG00000019734 Tmc4 transmembrane channel-like gene family 4 protein_coding Mus_musculus

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