C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: solute carrier family 3 (amino acid transporter heavy chain), member 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000168003 SLC3A2 9606 + 11:62856102-62888875 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000338663 SLC3A2-004 62880872-62888855 protein_coding
  ENST00000377889 SLC3A2-002 62856144-62888853 protein_coding
  ENST00000377890 SLC3A2-001 62856102-62888793 protein_coding
  ENST00000377891 SLC3A2-003 62856111-62888860 protein_coding
  ENST00000457660 SLC3A2-016 62881805-62886526 processed_transcript
  ENST00000535296 SLC3A2-026 62856168-62888875 protein_coding
  ENST00000535768 SLC3A2-015 62884455-62888169 retained_intron
  ENST00000536981 SLC3A2-022 62881725-62888845 protein_coding
  ENST00000537508 SLC3A2-009 62881668-62885314 processed_transcript
  ENST00000537839 SLC3A2-011 62881699-62883998 processed_transcript
  ENST00000538084 SLC3A2-005 62870814-62881994 protein_coding
  ENST00000538682 SLC3A2-018 62881709-62888455 processed_transcript
  ENST00000539458 SLC3A2-007 62880896-62882037 protein_coding
  ENST00000539507 SLC3A2-019 62885177-62888860 protein_coding
  ENST00000539891 SLC3A2-012 62881699-62888368 protein_coding
  ENST00000541372 SLC3A2-021 62880896-62881290 protein_coding
  ENST00000541425 SLC3A2-014 62882961-62885587 nonsense_mediated_decay
  ENST00000541649 SLC3A2-008 62881698-62882386 retained_intron
  ENST00000542793 SLC3A2-017 62887870-62888520 retained_intron
  ENST00000542922 SLC3A2-025 62883348-62888858 retained_intron
  ENST00000544377 SLC3A2-006 62880422-62881428 protein_coding
  ENST00000546253 SLC3A2-010 62881722-62884512 processed_transcript
  ENST00000546312 SLC3A2-013 62882775-62885387 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000338663ENST00000377890ENST00000377891ENST00000535296ENST00000537508ENST00000538084ENST00000539458ENST00000539507ENST00000541425ENST00000541649ENST00000542922ENST00000546312
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000338663 60.183±0.00 59.448±0.00 14.069±0.00 31.195±26.07 27.231±22.24 26.021±23.07 6.643±5.45 63.332±58.97 19.620±13.46 43.546±34.63 67.435±66.36 66.033±58.48 75.460±17.71 48.201±1.26
ENST00000377890 N/A N/A N/A N/A N/A 1.235±0.00 N/A N/A N/A N/A N/A 16.485±15.19 16.210±0.00 10.600±0.00
ENST00000377891 N/A N/A N/A N/A N/A N/A N/A 1.912±0.00 N/A N/A N/A N/A N/A N/A
ENST00000535296 N/A N/A N/A 4.108±0.00 N/A N/A N/A N/A N/A N/A N/A 2.704±0.00 N/A N/A
ENST00000537508 N/A N/A N/A N/A N/A N/A N/A N/A N/A 13.292±0.00 N/A N/A N/A N/A
ENST00000538084 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.339±0.00 N/A N/A N/A
ENST00000539458 N/A N/A 18.685±0.00 N/A 10.194±0.00 5.325±0.00 N/A 12.567±0.00 6.801±0.00 N/A N/A 4.989±0.00 N/A N/A
ENST00000539507 N/A N/A N/A N/A N/A N/A 1.271±0.00 N/A N/A N/A 2.020±0.00 N/A N/A N/A
ENST00000541425 N/A N/A N/A N/A N/A 4.318±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000541649 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.355±0.00 N/A N/A N/A
ENST00000542922 N/A N/A N/A N/A 3.062±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000546312 N/A N/A N/A 19.284±0.00 11.417±0.00 N/A 0.855±0.00 N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089X CIL_00089X_0001 VISTA 11:62298635-62900076

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003725 IDA double-stranded RNA binding
GO:0003824 IEA catalytic activity
GO:0005432 TAS calcium:sodium antiporter activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005886 IDA plasma membrane
GO:0005975 IEA carbohydrate metabolic process
GO:0006811 TAS ion transport
GO:0006816 NAS calcium ion transport
GO:0006865 TAS amino acid transport
GO:0007596 TAS blood coagulation
GO:0008152 IEA metabolic process
GO:0009986 IDA cell surface
GO:0015175 ISS neutral amino acid transmembrane transporter activity
GO:0015804 IEA neutral amino acid transport
GO:0015827 ISS tryptophan transport
GO:0016020 IDA membrane
GO:0016021 NAS integral component of membrane
GO:0016049 NAS cell growth
GO:0030054 IDA cell junction
GO:0035725 TAS sodium ion transmembrane transport
GO:0043169 IEA cation binding
GO:0043330 IMP response to exogenous dsRNA
GO:0044822 IDA poly(A) RNA binding
GO:0050900 TAS leukocyte migration
GO:0055085 TAS transmembrane transport
GO:0060356 ISS leucine import
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000036427 slc3a2a solute carrier family 3, member 2a protein_coding Danio_rerio
ENSDARG00000037012 slc3a2b solute carrier family 3, member 2b protein_coding Danio_rerio
ENSDARG00000055791 SLC3A2 (3 of 3) solute carrier family 3 (amino acid transporter heavy chain), member 2 protein_coding Danio_rerio
ENSMUSG00000010095 Slc3a2 solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2 protein_coding Mus_musculus

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