C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: polymerase (RNA) II (DNA directed) polypeptide J3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000168255 POLR2J3 9606 - 7:102537918-102572656 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000379340 POLR2J3-003 102537919-102572539 nonsense_mediated_decay
  ENST00000379357 POLR2J3-201 102537919-102543636 protein_coding
  ENST00000443430 POLR2J3-015 102567484-102572583 processed_transcript
  ENST00000464525 POLR2J3-002 102537918-102572560 nonsense_mediated_decay
  ENST00000486319 POLR2J3-004 102537920-102572649 nonsense_mediated_decay
  ENST00000489144 POLR2J3-001 102537918-102572567 nonsense_mediated_decay
  ENST00000502415 POLR2J3-007 102541151-102572470 processed_transcript
  ENST00000503564 POLR2J3-017 102538341-102566629 processed_transcript
  ENST00000504101 POLR2J3-013 102569305-102572580 retained_intron
  ENST00000504157 POLR2J3-006 102565976-102572560 processed_transcript
  ENST00000504677 POLR2J3-008 102540059-102566658 processed_transcript
  ENST00000506060 POLR2J3-014 102541104-102572521 processed_transcript
  ENST00000507355 POLR2J3-009 102543568-102572583 nonsense_mediated_decay
  ENST00000508848 POLR2J3-011 102540024-102572553 nonsense_mediated_decay
  ENST00000508910 POLR2J3-016 102566627-102572555 processed_transcript
  ENST00000511313 POLR2J3-005 102565876-102572583 protein_coding
  ENST00000511773 POLR2J3-018 102539676-102567070 processed_transcript
  ENST00000513438 POLR2J3-012 102569200-102572583 protein_coding
  ENST00000513506 POLR2J3-010 102540024-102572656 protein_coding
  ENST00000608621 POLR2J3-019 102562133-102572583 nonsense_mediated_decay
  ENST00000613744 POLR2J3-202 102566288-102572580 protein_coding
  ENST00000621093 POLR2J3-203 102567051-102572580 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000486319ENST00000504101ENST00000504157ENST00000507355ENST00000511313ENST00000513438
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000486319 N/A N/A N/A N/A N/A N/A 0.878±0.00 N/A N/A N/A N/A N/A N/A
ENST00000504101 N/A N/A N/A 2.547±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000504157 N/A 2.004±0.00 N/A N/A 0.757±0.00 N/A 0.312±0.00 N/A N/A N/A N/A N/A N/A
ENST00000507355 N/A N/A N/A N/A N/A N/A 1.263±0.00 N/A N/A N/A N/A N/A N/A
ENST00000511313 14.945±0.00 5.452±0.00 2.426±0.00 1.582±0.00 2.384±0.00 1.682±0.68 1.836±0.71 2.794±1.76 3.638±0.00 4.551±0.00 7.045±3.06 2.587±0.00 5.048±0.00
ENST00000513438 N/A N/A N/A 3.269±0.00 3.451±0.00 N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003899 IEA DNA-directed RNA polymerase activity
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0016021 IEA integral component of membrane
GO:0046983 IEA protein dimerization activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000035146 polr2j polymerase (RNA) II (DNA directed) polypeptide J protein_coding Danio_rerio

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