C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: surfactant protein C
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000168484 SFTPC 9606 + 8:22156913-22164479 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000318561 SFTPC-001 22161655-22164476 protein_coding
  ENST00000437090 SFTPC-011 22161798-22164076 protein_coding
  ENST00000518615 SFTPC-009 22161809-22163235 protein_coding
  ENST00000520605 SFTPC-006 22161800-22164479 protein_coding
  ENST00000521315 SFTPC-003 22161797-22164479 protein_coding
  ENST00000522109 SFTPC-010 22161805-22164008 protein_coding
  ENST00000522630 SFTPC-012 22163080-22163539 retained_intron
  ENST00000522880 SFTPC-014 22156913-22159711 processed_transcript
  ENST00000523296 SFTPC-008 22161808-22163998 protein_coding
  ENST00000524255 SFTPC-007 22161807-22164479 protein_coding
  ENST00000524318 SFTPC-005 22158724-22162732 processed_transcript
  ENST00000524350 SFTPC-013 22158613-22159799 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastColonHeartLiverLungOvaryTestisENST00000318561ENST00000518615ENST00000520605ENST00000521315ENST00000524255ENST00000524318
Transcript ID Adipose Breast Colon Heart Liver Lung Ovary Testis
ENST00000318561 N/A N/A 0.680±0.00 0.640±0.00 0.074±0.00 965.794±294.25 N/A 0.132±0.00
ENST00000518615 N/A 0.089±0.00 N/A 0.742±0.00 N/A 1410.746±847.05 0.187±0.00 N/A
ENST00000520605 N/A 0.059±0.00 1.552±0.00 N/A N/A N/A N/A N/A
ENST00000521315 N/A N/A N/A N/A N/A 670.645±514.52 0.270±0.07 N/A
ENST00000524255 N/A N/A N/A 0.308±0.00 N/A 1272.954±801.53 0.507±0.00 N/A
ENST00000524318 0.041±0.00 N/A N/A N/A N/A N/A N/A 0.225±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000810 CIL_000810_0001 VISTA 8:21687877-22288944
CIL_0008ZI CIL_0008ZI_0001 VISTA 8:21743578-22344815
CIL_000812 CIL_000812_0001 VISTA 8:21749915-22350771

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005576 IEA extracellular region
GO:0005615 IEA extracellular space
GO:0005737 IEA cytoplasm
GO:0005771 IEA multivesicular body
GO:0007585 IEA respiratory gaseous exchange
GO:0007623 IEA circadian rhythm
GO:0009725 IEA response to hormone
GO:0009749 IEA response to glucose
GO:0010033 IEA response to organic substance
GO:0032496 IEA response to lipopolysaccharide
GO:0032526 IEA response to retinoic acid
GO:0033189 IEA response to vitamin A
GO:0042803 IEA protein homodimerization activity
GO:0051260 IEA protein homooligomerization
GO:0051384 IEA response to glucocorticoid
GO:0051591 IEA response to cAMP
GO:0055093 IEA response to hyperoxia
GO:0070741 IEA response to interleukin-6
GO:0070848 IEA response to growth factor
GO:0071260 IEA cellular response to mechanical stimulus
GO:0071732 IEA cellular response to nitric oxide
GO:0097208 IEA alveolar lamellar body

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000022097 Sftpc surfactant associated protein C protein_coding Mus_musculus

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