C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Neuron-specific protein family member 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000168824 D4S234E 9606 + 4:4348140-4419058 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000397958 D4S234E-201 4386256-4419058 protein_coding
  ENST00000421177 D4S234E-001 4348140-4419058 protein_coding
  ENST00000433139 D4S234E-003 4386538-4418999 protein_coding
  ENST00000450293 D4S234E-006 4380982-4381972 processed_transcript
  ENST00000504171 D4S234E-004 4387105-4417879 protein_coding
  ENST00000504347 D4S234E-007 4380982-4385257 retained_intron
  ENST00000505246 D4S234E-008 4385081-4417620 protein_coding
  ENST00000506380 D4S234E-009 4385445-4417483 protein_coding
  ENST00000513555 D4S234E-002 4348313-4419058 protein_coding
  ENST00000513829 D4S234E-005 4387039-4419058 nonsense_mediated_decay
  ENST00000616591 D4S234E-202 4385473-4419058 protein_coding
  ENST00000621129 D4S234E-203 4387039-4419055 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonHeartLiverOvaryPlacentaTestisENST00000397958ENST00000433139ENST00000506380ENST00000513829ENST00000616591ENST00000621129
Transcript ID Brain Colon Heart Liver Ovary Placenta Testis
ENST00000397958 N/A N/A N/A N/A 10.414±0.00 N/A N/A
ENST00000433139 26.935±0.00 1.941±0.71 1.438±1.04 1.526±0.00 9.544±5.97 9.351±5.00 5.947±0.00
ENST00000506380 N/A N/A N/A N/A N/A 21.467±7.97 N/A
ENST00000513829 9.667±0.00 N/A N/A N/A N/A N/A N/A
ENST00000616591 6.443±0.00 N/A N/A N/A 7.004±0.00 N/A N/A
ENST00000621129 N/A N/A N/A N/A N/A 6.242±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008ZA CIL_0008ZA_0001 VISTA 4:4157066-4757929
CIL_00096M CIL_00096M_0001 VISTA 4:4215001-4816750
CIL_0008QQ CIL_0008QQ_0001 VISTA 4:4221140-4822323

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005634 TAS nucleus
GO:0005737 TAS cytoplasm
GO:0005768 IEA endosome
GO:0005794 IEA Golgi apparatus
GO:0007212 IEA dopamine receptor signaling pathway
GO:0016021 IEA integral component of membrane
GO:0016328 IEA lateral plasma membrane
GO:0032051 IEA clathrin light chain binding
GO:0045211 IEA postsynaptic membrane
GO:0048268 IEA clathrin coat assembly

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000029126 Nsg1 neuron specific gene family member 1 protein_coding Mus_musculus

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