C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: catenin (cadherin-associated protein), delta 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000169862 CTNND2 9606 - 5:10971840-11904043 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000304623 CTNND2-001 10971840-11904043 protein_coding
  ENST00000458100 CTNND2-201 10972933-11117492 protein_coding
  ENST00000495388 CTNND2-007 10972532-11384771 processed_transcript
  ENST00000502551 CTNND2-009 11346592-11903242 protein_coding
  ENST00000503622 CTNND2-004 10973340-11588848 protein_coding
  ENST00000504354 CTNND2-011 11346428-11588848 processed_transcript
  ENST00000504499 CTNND2-003 10973189-11904043 nonsense_mediated_decay
  ENST00000506324 CTNND2-017 10973587-11018060 processed_transcript
  ENST00000506735 CTNND2-016 11346595-11384912 processed_transcript
  ENST00000507430 CTNND2-015 11364598-11384937 retained_intron
  ENST00000508761 CTNND2-008 11397093-11903385 protein_coding
  ENST00000509868 CTNND2-013 11508371-11903979 processed_transcript
  ENST00000511278 CTNND2-010 11364857-11903192 processed_transcript
  ENST00000511377 CTNND2-005 10972895-11589019 protein_coding
  ENST00000513588 CTNND2-002 10972881-11903980 nonsense_mediated_decay
  ENST00000513598 CTNND2-012 11385025-11588811 protein_coding
  ENST00000514132 CTNND2-014 11384982-11386011 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000304623ENST00000458100ENST00000495388ENST00000503622ENST00000504354ENST00000504499ENST00000507430ENST00000511278ENST00000511377ENST00000513588
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000304623 N/A N/A N/A 18.289±8.13 N/A N/A 0.636±0.00 0.008±0.00 N/A 0.173±0.10 N/A 0.268±0.26 0.230±0.07 0.751±0.00
ENST00000458100 N/A N/A 0.116±0.00 N/A 0.183±0.06 0.416±0.00 N/A 0.090±0.00 0.160±0.00 N/A N/A 0.157±0.00 0.875±0.00 1.975±0.74
ENST00000495388 0.034±0.00 0.111±0.00 N/A 32.627±0.00 0.183±0.00 0.614±0.00 1.437±0.00 N/A 0.030±0.00 0.500±0.00 0.155±0.03 2.009±0.00 0.300±0.09 1.268±0.51
ENST00000503622 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.204±0.00 N/A N/A 0.331±0.09 N/A
ENST00000504354 N/A N/A N/A N/A N/A N/A N/A N/A 0.213±0.00 N/A N/A N/A N/A N/A
ENST00000504499 N/A 0.085±0.00 N/A N/A N/A N/A 0.550±0.39 N/A 0.085±0.00 N/A N/A N/A 0.329±0.00 N/A
ENST00000507430 N/A N/A N/A N/A 0.423±0.00 N/A N/A 0.177±0.00 N/A N/A N/A N/A N/A N/A
ENST00000511278 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.309±0.00 N/A N/A N/A N/A
ENST00000511377 N/A N/A N/A N/A N/A N/A N/A N/A 0.069±0.00 N/A N/A N/A N/A N/A
ENST00000513588 N/A N/A N/A 14.194±0.00 N/A 0.217±0.00 N/A 0.036±0.00 N/A N/A N/A N/A N/A 1.658±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006ML CIL_0006ML_0002 CGP 5:10679230-11904043

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001763 IEA morphogenesis of a branching structure
GO:0005488 IEA binding
GO:0005515 IPI:IEA protein binding
GO:0005634 IEA nucleus
GO:0005737 TAS cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007155 TAS cell adhesion
GO:0007165 TAS signal transduction
GO:0007275 IEA multicellular organismal development
GO:0007612 IEA learning
GO:0016337 IEA single organismal cell-cell adhesion
GO:0030054 IEA cell junction
GO:0048167 IEA regulation of synaptic plasticity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000003779 ctnnd2b catenin (cadherin-associated protein), delta 2b protein_coding Danio_rerio
ENSDARG00000062415 ctnnd2a catenin (cadherin-associated protein), delta 2a protein_coding Danio_rerio
ENSMUSG00000022240 Ctnnd2 catenin (cadherin associated protein), delta 2 protein_coding Mus_musculus

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