C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tripartite motif containing 56
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000169871 TRIM56 9606 + 7:101085439-101091736 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000306085 TRIM56-001 101085439-101090628 protein_coding
  ENST00000412507 TRIM56-002 101085522-101091736 protein_coding
  ENST00000467847 TRIM56-003 101086785-101087508 retained_intron
  ENST00000487252 TRIM56-004 101089611-101090624 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartKidneyLungMuscleOvaryPlacentaENST00000306085ENST00000412507ENST00000467847ENST00000487252
Transcript ID Bladder Brain Breast Colon Heart Kidney Lung Muscle Ovary Placenta
ENST00000306085 0.513±0.00 0.191±0.00 2.922±0.00 1.168±0.00 0.787±0.00 2.001±0.00 1.126±0.00 0.857±0.00 3.211±0.00 3.635±2.32
ENST00000412507 N/A N/A N/A N/A N/A 3.256±0.00 N/A 0.493±0.00 N/A N/A
ENST00000467847 1.793±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000487252 N/A 0.198±0.00 N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004842 ISS ubiquitin-protein transferase activity
GO:0005515 IEA protein binding
GO:0005622 IEA intracellular
GO:0005737 ISS cytoplasm
GO:0005829 TAS cytosol
GO:0008270 IEA zinc ion binding
GO:0016874 IEA ligase activity
GO:0032479 TAS regulation of type I interferon production
GO:0032481 TAS positive regulation of type I interferon production
GO:0032608 ISS interferon-beta production
GO:0034340 ISS response to type I interferon
GO:0044822 IDA poly(A) RNA binding
GO:0045087 TAS innate immune response
GO:0046597 IEA negative regulation of viral entry into host cell
GO:0046872 IEA metal ion binding
GO:0051607 ISS defense response to virus
GO:0070534 ISS protein K63-linked ubiquitination
GO:1902187 IEA negative regulation of viral release from host cell

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000043279 Trim56 tripartite motif-containing 56 protein_coding Mus_musculus

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