C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tripartite motif-containing 56
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000043279 Trim56 10090 - 5:137105644-137116209 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000054384 Trim56-001 137105644-137116207 protein_coding
  ENSMUST00000152207 Trim56-002 137114024-137116209 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000054384ENSMUST00000152207
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000054384 1.872±1.27 2.623±1.10 1.608±0.71 0.050±0.00 2.432±1.54 2.677±0.98 0.686±0.18 0.802±0.35 1.297±0.62 4.980±1.00 0.431±0.08 2.918±1.99 0.682±0.26
ENSMUST00000152207 4.345±1.70 6.761±1.21 N/A N/A 6.110±3.38 5.886±1.06 N/A 3.039±0.54 1.688±0.22 8.657±1.06 N/A 4.491±1.07 N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004842 IDA ubiquitin-protein transferase activity
GO:0005515 IPI protein binding
GO:0005622 IEA intracellular
GO:0005737 IDA cytoplasm
GO:0008270 IEA zinc ion binding
GO:0016874 IEA ligase activity
GO:0032608 IMP interferon-beta production
GO:0034340 IDA response to type I interferon
GO:0044822 IEA poly(A) RNA binding
GO:0045087 IDA innate immune response
GO:0046597 IDA negative regulation of viral entry into host cell
GO:0051607 IMP defense response to virus
GO:0070534 IDA protein K63-linked ubiquitination
GO:1902187 IDA negative regulation of viral release from host cell

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000169871 TRIM56 tripartite motif containing 56 protein_coding Homo_sapiens

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