C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: non imprinted in Prader-Willi/Angelman syndrome 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000170113 NIPA1 9606 + 15:22773063-22829791 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000337435 NIPA1-001 22786632-22829791 protein_coding
  ENST00000437912 NIPA1-004 22773063-22829789 protein_coding
  ENST00000557930 NIPA1-007 22786813-22823916 nonsense_mediated_decay
  ENST00000559448 NIPA1-002 22786767-22826076 nonsense_mediated_decay
  ENST00000560069 NIPA1-008 22786218-22823771 nonsense_mediated_decay
  ENST00000560105 NIPA1-006 22786758-22811046 retained_intron
  ENST00000561183 NIPA1-003 22785899-22824752 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000337435ENST00000437912ENST00000559448ENST00000561183
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000337435 0.402±0.00 0.322±0.00 N/A 17.062±0.00 0.831±0.10 1.871±0.20 0.358±0.03 2.645±1.82 0.676±0.00 0.913±0.48 0.474±0.24 1.093±0.63 0.853±0.39 2.409±0.00
ENST00000437912 N/A N/A N/A N/A 0.308±0.00 N/A 0.116±0.03 N/A N/A 0.455±0.00 N/A 0.064±0.00 N/A 1.596±0.98
ENST00000559448 N/A N/A 1.179±0.00 7.544±0.00 N/A 0.679±0.00 0.544±0.00 N/A N/A 1.968±0.00 0.115±0.00 1.314±0.00 N/A N/A
ENST00000561183 N/A N/A 0.901±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 3.078±0.00 0.750±0.00 N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005769 IEA early endosome
GO:0005886 IEA plasma membrane
GO:0008219 IEA cell death
GO:0015095 IEA magnesium ion transmembrane transporter activity
GO:0015693 IEA magnesium ion transport
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000055917 nipa1 non imprinted in Prader-Willi/Angelman syndrome 1 protein_coding Danio_rerio
ENSMUSG00000047037 Nipa1 non imprinted in Prader-Willi/Angelman syndrome 1 homolog (human) protein_coding Mus_musculus

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