C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: beaded filament structural protein 2, phakinin
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000170819 BFSP2 9606 + 3:133399995-133475222 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000302334 BFSP2-001 133399995-133475193 protein_coding
  ENST00000503047 BFSP2-003 133472342-133475206 retained_intron
  ENST00000510039 BFSP2-006 133450423-133475222 processed_transcript
  ENST00000511140 BFSP2-002 133400462-133412550 processed_transcript
  ENST00000511434 BFSP2-004 133449066-133472515 processed_transcript
  ENST00000513441 BFSP2-005 133400074-133404874 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastKidneyOvaryPlacentaTestisENST00000302334ENST00000503047ENST00000510039ENST00000511434
Transcript ID Adrenal Brain Breast Kidney Ovary Placenta Testis
ENST00000302334 0.111±0.00 N/A N/A N/A 0.030±0.01 N/A N/A
ENST00000503047 1.326±0.00 N/A 0.155±0.00 N/A 0.210±0.02 N/A 0.141±0.01
ENST00000510039 0.156±0.00 0.040±0.00 N/A N/A N/A 0.476±0.00 N/A
ENST00000511434 N/A N/A N/A 0.029±0.00 0.069±0.00 N/A 0.080±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007Z7 CIL_0007Z7_0001 VISTA 3:132835429-133435995

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005198 IEA structural molecule activity
GO:0005200 TAS structural constituent of cytoskeleton
GO:0005212 IEA structural constituent of eye lens
GO:0005515 IEA protein binding
GO:0005737 IDA cytoplasm
GO:0005882 IEA intermediate filament
GO:0005886 IDA plasma membrane
GO:0007010 IEA cytoskeleton organization
GO:0007601 IEA visual perception
GO:0045104 IEA intermediate filament cytoskeleton organization
GO:0048469 IEA cell maturation
GO:0050896 IEA response to stimulus
GO:0070307 IEA lens fiber cell development

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000011998 bfsp2 beaded filament structural protein 2, phakinin protein_coding Danio_rerio
ENSMUSG00000032556 Bfsp2 beaded filament structural protein 2, phakinin protein_coding Mus_musculus

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