C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: synaptonemal complex central element protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000171772 SYCE1 9606 - 10:133553901-133569835 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000303903 SYCE1-004 133554290-133565583 protein_coding
  ENST00000343131 SYCE1-201 133554844-133565634 protein_coding
  ENST00000368517 SYCE1-001 133553901-133568291 protein_coding
  ENST00000432597 SYCE1-202 133567798-133569835 protein_coding
  ENST00000479535 SYCE1-002 133553901-133565583 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartOvaryPlacentaTestisENST00000303903ENST00000343131ENST00000368517ENST00000432597ENST00000479535
Transcript ID Adipose Adrenal Brain Breast Colon Heart Ovary Placenta Testis
ENST00000303903 0.349±0.00 N/A N/A 1.310±0.00 0.227±0.00 N/A 0.055±0.00 14.324±0.00 67.237±59.82
ENST00000343131 0.221±0.00 0.535±0.00 5.443±0.00 1.761±0.00 N/A 0.113±0.00 0.991±0.00 9.544±1.22 9.193±0.00
ENST00000368517 N/A N/A N/A 0.412±0.00 N/A 0.080±0.00 N/A N/A 11.717±0.00
ENST00000432597 N/A N/A N/A N/A 0.076±0.00 N/A N/A N/A N/A
ENST00000479535 0.110±0.00 N/A 1.075±0.00 N/A N/A N/A N/A 1.818±0.00 10.349±6.66

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00001G CIL_00001G_0001 CGP 10:133520406-133569835

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000795 IEA synaptonemal complex
GO:0000801 ISS central element
GO:0005515 IEA protein binding
GO:0007130 IC synaptonemal complex assembly

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000025480 Syce1 synaptonemal complex central element protein 1 protein_coding Mus_musculus

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