C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: protocadherin beta 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000171815 PCDHB1 9606 + 5:141051135-141059344 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000306549 PCDHB1-001 141051135-141059344 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000306549
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000306549 0.049±0.00 0.115±0.00 0.088±0.00 0.056±0.03 0.067±0.00 0.071±0.05 0.036±0.03 0.101±0.08 0.022±0.01 0.048±0.03 0.049±0.00 0.074±0.01 0.026±0.00 0.236±0.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00062S CIL_00062S_000C CGP 5:141051135-141098703

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005886 IEA plasma membrane
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000010684 CU915772.1 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000071889 pcdh2g8 protocadherin 2 gamma 8 protein_coding Danio_rerio
ENSDARG00000071891 pcdh2g6 protocadherin 2 gamma 6 protein_coding Danio_rerio
ENSDARG00000071892 CU915772.1 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000074738 pcdh2g9 protocadherin 2 gamma 9 protein_coding Danio_rerio
ENSDARG00000077343 CT573264.2 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000077867 CT573264.3 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000079937 pcdh2g5 protocadherin 2 gamma 5 protein_coding Danio_rerio
ENSMUSG00000051663 Pcdhb1 protocadherin beta 1 protein_coding Mus_musculus

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