C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: protocadherin beta 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000051663 Pcdhb1 10090 + 18:37264998-37267454 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000052366 Pcdhb1-201 37264998-37267454 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainKidneyLungOvaryTestisENSMUST00000052366
Transcript ID Brain Kidney Lung Ovary Testis
ENSMUST00000052366 0.023±0.02 0.023±0.01 0.020±0.00 0.072±0.03 0.312±0.12

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00062S CIL_00062S_000Y CGP 18:37264998-37297613

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005886 IEA plasma membrane
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000010684 CU915772.1 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000071889 pcdh2g8 protocadherin 2 gamma 8 protein_coding Danio_rerio
ENSDARG00000071891 pcdh2g6 protocadherin 2 gamma 6 protein_coding Danio_rerio
ENSDARG00000071892 CU915772.1 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000074738 pcdh2g9 protocadherin 2 gamma 9 protein_coding Danio_rerio
ENSDARG00000077343 CT573264.2 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000077867 CT573264.3 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000079937 pcdh2g5 protocadherin 2 gamma 5 protein_coding Danio_rerio
ENSG00000171815 PCDHB1 protocadherin beta 1 protein_coding Homo_sapiens

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