C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: zinc finger protein 540
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000171817 ZNF540 9606 + 19:37551406-37614097 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000316433 ZNF540-002 37594886-37614097 protein_coding
  ENST00000343599 ZNF540-004 37595253-37614095 protein_coding
  ENST00000586134 ZNF540-003 37594909-37612936 protein_coding
  ENST00000586792 ZNF540-005 37594973-37611872 protein_coding
  ENST00000587220 ZNF540-007 37594876-37601157 processed_transcript
  ENST00000589117 ZNF540-001 37594830-37613387 protein_coding
  ENST00000589285 ZNF540-010 37610988-37614093 retained_intron
  ENST00000589857 ZNF540-006 37594876-37611690 processed_transcript
  ENST00000590588 ZNF540-008 37594905-37611577 protein_coding
  ENST00000592533 ZNF540-009 37551406-37614095 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainOvaryENST00000316433
Transcript ID Brain Ovary
ENST00000316433 3.421±0.00 3.785±0.33

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000900 IMP translation repressor activity, nucleic acid binding
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0003700 IBA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005622 IEA intracellular
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0017148 IMP negative regulation of translation
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000076108 zgc:194336 zgc:194336 protein_coding Danio_rerio
ENSDARG00000088352 si:ch211-271g18.3 si:ch211-271g18.3 protein_coding Danio_rerio
ENSDARG00000089537 CABZ01079304.1 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000090942 CABZ01054394.3 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000093134 CR388165.1 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000096851 si:dkey-111k8.6 si:dkey-111k8.6 protein_coding Danio_rerio

Loading