C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: zinc finger protein 540
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000343599 ZNF540-004 ENSG00000171817 9606 + 19:37595253-37614095 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

No expression data.

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000900 IMP translation repressor activity, nucleic acid binding
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0003700 IBA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005622 IEA intracellular
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0017148 IMP negative regulation of translation
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000182746 Gm26920-001 nonsense_mediated_decay Mus_musculus 2e-34 152
ENSMUST00000183190 Zfp82-002 protein_coding Mus_musculus 2e-34 152
ENSMUST00000080834 Zfp82-001 protein_coding Mus_musculus 2e-34 152
ENSMUST00000091481 Zfp72-201 protein_coding Mus_musculus 5e-30 137
ENSMUST00000186475 protein_coding Mus_musculus 9e-28 130
ENSMUST00000187028 nonsense_mediated_decay Mus_musculus 9e-28 130
ENSMUST00000060762 Zfp397-201 protein_coding Mus_musculus 4e-21 108
ENSMUST00000054780 Zfp959-001 protein_coding Mus_musculus 7e-19 100
ENSMUST00000189452 Zfp119b-002 protein_coding Mus_musculus 0.000000000000002 90
ENSMUST00000056147 Zfp119b-001 protein_coding Mus_musculus 0.000000000000002 90
ENSMUST00000182248 Zfp566-002 retained_intron Mus_musculus 0.000000000000005 88
ENSMUST00000088785 Zfp566-001 protein_coding Mus_musculus 0.00000000000002 86
ENSMUST00000086281 Zfp599-001 protein_coding Mus_musculus 0.0000000000009 81
ENSMUST00000182919 Zfp82-005 protein_coding Mus_musculus 0.00000000001 77
ENSMUST00000105313 Zfp873-201 protein_coding Mus_musculus 0.00000000004 75
ENSMUST00000063980 Zkscan7-201 protein_coding Mus_musculus 0.0000000002 73
ENSMUST00000182546 Zfp82-006 protein_coding Mus_musculus 0.000000002 69
ENSMUST00000182483 Zfp82-003 retained_intron Mus_musculus 0.000000002 69
ENSMUST00000183025 Zfp82-007 retained_intron Mus_musculus 0.000000002 69
ENSMUST00000127027 Zfp960-001 protein_coding Mus_musculus 0.000000007 68
ENSMUST00000147630 Zfp97-001 protein_coding Mus_musculus 0.000000007 68
ENSMUST00000172579 2410141K09Rik-003 protein_coding Mus_musculus 0.0000003 62
ENSMUST00000166005 Zfp426-201 protein_coding Mus_musculus 0.000001 60
ENSMUST00000163348 Zfp426-012 protein_coding Mus_musculus 0.000001 60
ENSMUST00000080386 Zfp426-002 protein_coding Mus_musculus 0.000001 60
ENSMUST00000169558 Zfp426-004 protein_coding Mus_musculus 0.000001 60
ENSMUST00000167457 Zfp426-003 protein_coding Mus_musculus 0.000001 60
ENSMUST00000115562 Zfp426-001 protein_coding Mus_musculus 0.000001 60
ENSMUST00000168095 Zfp426-008 nonsense_mediated_decay Mus_musculus 0.000001 60
ENSMUST00000060063 Zfp846-201 protein_coding Mus_musculus 0.000001 60
ENSMUST00000140668 Zfp846-001 nonsense_mediated_decay Mus_musculus 0.000001 60
ENSMUST00000115557 Zfp846-002 protein_coding Mus_musculus 0.000001 60
ENSMUST00000080987 Zfp869-201 protein_coding Mus_musculus 0.000004 58

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