C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: trafficking protein particle complex 12
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000171853 TRAPPC12 9606 + 2:3379675-3485094 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000324266 TRAPPC12-002 3379686-3479566 protein_coding
  ENST00000382110 TRAPPC12-001 3379675-3479567 protein_coding
  ENST00000411973 TRAPPC12-005 3388127-3421970 nonsense_mediated_decay
  ENST00000415624 TRAPPC12-016 3443868-3479571 protein_coding
  ENST00000416918 TRAPPC12-021 3465673-3479567 protein_coding
  ENST00000417243 TRAPPC12-018 3421883-3479567 nonsense_mediated_decay
  ENST00000433382 TRAPPC12-008 3443726-3478871 retained_intron
  ENST00000437733 TRAPPC12-020 3460301-3478913 nonsense_mediated_decay
  ENST00000441099 TRAPPC12-010 3424619-3458181 nonsense_mediated_decay
  ENST00000441983 TRAPPC12-007 3389694-3460303 protein_coding
  ENST00000452495 TRAPPC12-023 3477715-3485094 protein_coding
  ENST00000457845 TRAPPC12-006 3389686-3443806 nonsense_mediated_decay
  ENST00000461577 TRAPPC12-011 3459931-3478916 retained_intron
  ENST00000462983 TRAPPC12-012 3443792-3460942 processed_transcript
  ENST00000469147 TRAPPC12-014 3424598-3468006 processed_transcript
  ENST00000469400 TRAPPC12-015 3472421-3479567 processed_transcript
  ENST00000473348 TRAPPC12-019 3458313-3478913 processed_transcript
  ENST00000479897 TRAPPC12-013 3443796-3465807 retained_intron
  ENST00000479955 TRAPPC12-009 3449196-3460327 processed_transcript
  ENST00000482645 TRAPPC12-003 3379720-3389000 retained_intron
  ENST00000489032 TRAPPC12-022 3460282-3478101 retained_intron
  ENST00000493792 TRAPPC12-017 3478714-3479565 retained_intron
  ENST00000497597 TRAPPC12-004 3454612-3479566 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000324266ENST00000382110ENST00000415624ENST00000416918ENST00000417243ENST00000441983ENST00000473348ENST00000482645ENST00000493792ENST00000497597
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000324266 6.489±0.00 9.971±0.00 N/A 6.491±3.62 4.271±2.45 4.124±0.00 7.351±4.66 5.343±2.11 10.074±0.00 8.691±0.00 25.481±0.00 9.987±7.93 13.247±3.69 N/A
ENST00000382110 6.651±0.00 N/A N/A 0.832±0.00 11.124±0.00 3.061±0.00 N/A 7.292±0.00 N/A N/A 1.776±0.00 7.122±0.00 N/A 25.738±7.76
ENST00000415624 7.104±0.00 14.860±0.00 N/A 12.947±0.00 12.711±0.00 3.854±0.00 N/A N/A N/A N/A N/A 18.891±0.00 N/A 41.261±0.00
ENST00000416918 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 12.319±0.00 69.719±0.00
ENST00000417243 N/A N/A N/A N/A N/A N/A N/A 9.112±0.00 7.708±0.00 N/A N/A N/A N/A 20.174±0.00
ENST00000441983 N/A N/A N/A 3.264±0.00 4.751±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000473348 N/A N/A N/A 7.442±0.00 N/A N/A N/A N/A N/A N/A N/A 10.827±0.00 13.766±0.00 80.979±0.00
ENST00000482645 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.422±0.00 N/A N/A N/A
ENST00000493792 N/A N/A N/A N/A N/A 6.222±0.00 N/A N/A N/A N/A N/A 20.372±0.00 N/A N/A
ENST00000497597 N/A 2.396±0.00 1.769±0.00 N/A N/A N/A N/A N/A N/A 0.895±0.00 0.499±0.00 0.813±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008EQ CIL_0008EQ_0001 VISTA 2:2964425-3567078

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005198 IEA structural molecule activity
GO:0005515 IEA protein binding
GO:0006890 IEA retrograde vesicle-mediated transport, Golgi to ER
GO:0016192 IEA vesicle-mediated transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000060101 trappc12 trafficking protein particle complex 12 protein_coding Danio_rerio
ENSMUSG00000020628 Trappc12 trafficking protein particle complex 12 protein_coding Mus_musculus

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