C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: trafficking protein particle complex 12
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000020628 Trappc12 10090 - 12:28690629-28750453 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000020954 Trappc12-201 28690629-28750453 protein_coding
  ENSMUST00000168129 Trappc12-202 28690629-28750394 protein_coding
  ENSMUST00000170994 Trappc12-203 28709508-28750453 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000020954ENSMUST00000168129ENSMUST00000170994
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000020954 5.718±1.19 6.936±2.13 4.446±0.97 5.109±0.28 5.157±2.82 5.472±1.27 2.460±0.52 3.573±0.67 2.326±0.71 4.371±0.56 1.349±0.41 5.767±2.43 2.242±0.15 3.128±1.22
ENSMUST00000168129 9.570±0.83 7.455±2.36 13.167±0.85 10.157±3.27 7.023±1.02 5.992±2.96 6.472±0.52 10.274±0.64 6.143±1.30 6.850±1.19 3.019±0.29 10.136±3.22 6.085±1.58 4.779±1.95
ENSMUST00000170994 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.716±0.00 1.699±0.00 1.648±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008EQ CIL_0008EQ_0002 VISTA 12:28516804-29118905
CIL_0006OI CIL_0006OI_0002 CGP 12:28675231-28750453
CIL_0001Q5 CIL_0001Q5_0002 CGP 12:28690629-28867491

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0016192 IEA vesicle-mediated transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000060101 trappc12 trafficking protein particle complex 12 protein_coding Danio_rerio
ENSG00000171853 TRAPPC12 trafficking protein particle complex 12 protein_coding Homo_sapiens

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