C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ribosomal protein S21
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000171858 RPS21 9606 + 20:62387116-62388520 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000343986 RPS21-001 62387116-62388519 protein_coding
  ENST00000370562 RPS21-002 62387297-62388520 protein_coding
  ENST00000370592 RPS21-003 62387325-62388115 protein_coding
  ENST00000450116 RPS21-201 62387318-62388519 protein_coding
  ENST00000492356 RPS21-004 62387123-62388519 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000343986
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000343986 500.385±0.00 814.160±0.00 21.008±0.00 138.985±45.16 312.670±165.59 314.812±231.30 144.301±108.76 206.500±142.87 244.691±116.93 686.660±622.99 560.203±424.01 1810.072±1041.42 1005.877±282.46 412.182±79.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001DP CIL_0001DP_0001 CGP 20:62307955-62388520
CIL_0001DQ CIL_0001DQ_0001 CGP 20:62387116-62407285

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0000447 IBA endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000461 IBA endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0003735 IEA:IBA structural constituent of ribosome
GO:0005622 IEA intracellular
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0005840 IEA ribosome
GO:0006412 IEA:IC translation
GO:0006413 TAS translational initiation
GO:0006414 TAS translational elongation
GO:0006415 TAS translational termination
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0010467 TAS gene expression
GO:0015935 IDA small ribosomal subunit
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0019058 TAS viral life cycle
GO:0019083 TAS viral transcription
GO:0022627 IDA cytosolic small ribosomal subunit
GO:0042274 IBA ribosomal small subunit biogenesis
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding
GO:0047485 IPI protein N-terminus binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000025850 rps21 ribosomal protein S21 protein_coding Danio_rerio
ENSMUSG00000039001 Rps21 ribosomal protein S21 protein_coding Mus_musculus

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