C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S21
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000343986 RPS21-001 ENSG00000171858 9606 + 20:62387116-62388519 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000343986
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000343986 500.385±0.00 814.160±0.00 21.008±0.00 138.985±45.16 312.670±165.59 314.812±231.30 144.301±108.76 206.500±142.87 244.691±116.93 686.660±622.99 560.203±424.01 1810.072±1041.42 1005.877±282.46 412.182±79.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001DP CIL_0001DP_0001 CGP 20:62307955-62388520
CIL_0001DQ CIL_0001DQ_0001 CGP 20:62387116-62407285

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0000447 IBA endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000461 IBA endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0003735 IEA:IBA structural constituent of ribosome
GO:0005622 IEA intracellular
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0005840 IEA ribosome
GO:0006412 IEA:IC translation
GO:0006413 TAS translational initiation
GO:0006414 TAS translational elongation
GO:0006415 TAS translational termination
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0010467 TAS gene expression
GO:0015935 IDA small ribosomal subunit
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0019058 TAS viral life cycle
GO:0019083 TAS viral transcription
GO:0022627 IDA cytosolic small ribosomal subunit
GO:0042274 IBA ribosomal small subunit biogenesis
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding
GO:0047485 IPI protein N-terminus binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000059080 Rps21-001 protein_coding Mus_musculus 0 350
ENSMUST00000148629 Rps21-002 retained_intron Mus_musculus 0 333
ENSMUST00000143451 Gm5963-001 processed_pseudogene Mus_musculus 0 243
ENSMUST00000145043 Rps21-003 retained_intron Mus_musculus 2.94273e-44 182

Loading