C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: lectin, galactoside-binding, soluble, 9C
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000171916 LGALS9C 9606 + 17:18476737-18494945 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000328114 LGALS9C-001 18476774-18494945 protein_coding
  ENST00000577265 LGALS9C-008 18489481-18494941 retained_intron
  ENST00000577691 LGALS9C-005 18476756-18494940 nonsense_mediated_decay
  ENST00000578450 LGALS9C-010 18492169-18492739 retained_intron
  ENST00000578563 LGALS9C-006 18486052-18487757 nonsense_mediated_decay
  ENST00000578983 LGALS9C-012 18476799-18486392 processed_transcript
  ENST00000579773 LGALS9C-002 18476784-18494434 nonsense_mediated_decay
  ENST00000580674 LGALS9C-004 18476800-18494926 nonsense_mediated_decay
  ENST00000581545 LGALS9C-003 18476737-18494818 protein_coding
  ENST00000582333 LGALS9C-011 18476765-18492537 protein_coding
  ENST00000582928 LGALS9C-007 18476800-18484335 retained_intron
  ENST00000583322 LGALS9C-014 18476796-18494938 protein_coding
  ENST00000584127 LGALS9C-009 18489542-18494940 retained_intron
  ENST00000584170 LGALS9C-013 18485755-18488997 retained_intron
  ENST00000584941 LGALS9C-015 18476798-18494641 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonHeartLiverLungOvaryPlacentaTestisENST00000577265ENST00000577691ENST00000578563ENST00000578983ENST00000579773ENST00000581545ENST00000582928ENST00000584127ENST00000584170ENST00000584941
Transcript ID Adrenal Breast Colon Heart Liver Lung Ovary Placenta Testis
ENST00000577265 N/A N/A 0.181±0.09 0.034±0.00 N/A 0.130±0.00 0.441±0.00 0.034±0.00 N/A
ENST00000577691 0.066±0.00 N/A 0.228±0.00 N/A N/A N/A 0.040±0.00 0.103±0.02 N/A
ENST00000578563 N/A N/A 0.284±0.00 N/A N/A N/A 0.837±0.00 0.187±0.00 N/A
ENST00000578983 N/A 1.106±0.00 2.322±0.00 N/A 0.188±0.00 N/A 0.614±0.19 N/A N/A
ENST00000579773 N/A N/A N/A N/A N/A N/A N/A 0.066±0.00 N/A
ENST00000581545 N/A N/A N/A 0.016±0.00 0.045±0.00 0.058±0.00 N/A 0.069±0.00 0.027±0.00
ENST00000582928 N/A N/A N/A N/A N/A 0.114±0.00 N/A 0.110±0.00 N/A
ENST00000584127 N/A N/A 0.029±0.00 N/A N/A 0.038±0.00 0.142±0.03 N/A 0.414±0.00
ENST00000584170 N/A N/A N/A N/A N/A N/A N/A N/A 0.035±0.00
ENST00000584941 N/A N/A N/A 0.034±0.00 N/A N/A N/A 0.052±0.00 0.027±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0030246 IEA carbohydrate binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000025903 lgals9l1 lectin, galactoside-binding, soluble, 9 (galectin 9)-like 1 protein_coding Danio_rerio
ENSDARG00000041060 zgc:92326 zgc:92326 protein_coding Danio_rerio
ENSDARG00000069058 zgc:136924 zgc:136924 protein_coding Danio_rerio
ENSDARG00000087311 zgc:171951 zgc:171951 protein_coding Danio_rerio
ENSDARG00000093059 si:ch211-209m20.9 si:ch211-209m20.9 protein_coding Danio_rerio
ENSMUSG00000001123 Lgals9 lectin, galactose binding, soluble 9 protein_coding Mus_musculus

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