C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: trans-golgi network vesicle protein 23 homolog B (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000171928 TVP23B 9606 + 17:18780995-18806714 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000307767 TVP23B-001 18780995-18806714 protein_coding
  ENST00000476139 TVP23B-002 18781314-18806714 protein_coding
  ENST00000482741 TVP23B-003 18795806-18806714 retained_intron
  ENST00000571018 TVP23B-004 18781143-18805661 nonsense_mediated_decay
  ENST00000572845 TVP23B-009 18789363-18799131 retained_intron
  ENST00000574226 TVP23B-005 18781155-18804616 protein_coding
  ENST00000574294 TVP23B-006 18781111-18805895 nonsense_mediated_decay
  ENST00000575261 TVP23B-008 18781180-18804263 protein_coding
  ENST00000581733 TVP23B-011 18789035-18806202 protein_coding
  ENST00000582288 TVP23B-010 18781287-18789669 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000307767ENST00000476139ENST00000482741ENST00000574226ENST00000574294ENST00000575261ENST00000581733
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000307767 1.383±0.00 1.127±0.00 N/A 1.725±1.35 0.814±0.17 0.931±0.20 0.855±0.14 1.875±1.02 2.187±0.83 1.310±0.26 0.483±0.00 1.836±1.14 1.250±0.25 2.071±0.77
ENST00000476139 N/A N/A 0.269±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.339±0.00
ENST00000482741 0.188±0.00 0.711±0.00 0.526±0.00 0.408±0.16 0.720±0.46 0.794±0.00 0.198±0.07 0.456±0.00 0.466±0.00 N/A 0.072±0.00 0.213±0.00 N/A 0.314±0.00
ENST00000574226 N/A N/A N/A N/A 1.228±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000574294 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.347±0.00 N/A N/A N/A
ENST00000575261 N/A N/A N/A N/A 1.623±0.00 N/A N/A N/A N/A N/A N/A 3.665±0.00 1.503±0.00 3.095±0.00
ENST00000581733 1.523±0.00 1.769±0.00 1.854±0.00 2.152±0.00 1.234±0.41 3.330±1.32 1.425±0.46 5.209±0.00 1.639±0.32 3.246±1.29 N/A 2.824±1.20 1.084±0.23 3.951±2.19

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00013W CIL_00013W_0001 CGP 17:18744024-18806714

Gene Ontology
GO IDEvidence TypeGO Description
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000001804 zgc:112148 zgc:112148 protein_coding Danio_rerio
ENSDARG00000057060 tvp23b trans-golgi network vesicle protein 23 homolog B (S. cerevisiae) protein_coding Danio_rerio
ENSMUSG00000014177 Tvp23b trans-golgi network vesicle protein 23B protein_coding Mus_musculus

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