C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00013W_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000171931-ENSG00000171928 CGP 9606 17:18744024-18806714
GeneTranscriptPositionBiotype
ENSG00000171928 (TVP23B)
trans-golgi network vesicle protein 23 homolog B (S. cerevisiae) 		ENST00000307767 (TVP23B-001) 18780995-18806714 protein_coding
ENST00000476139 (TVP23B-002) 18781314-18806714 protein_coding
ENST00000482741 (TVP23B-003) 18795806-18806714 retained_intron
ENST00000571018 (TVP23B-004) 18781143-18805661 nonsense_mediated_decay
ENST00000572845 (TVP23B-009) 18789363-18799131 retained_intron
ENST00000574226 (TVP23B-005) 18781155-18804616 protein_coding
ENST00000574294 (TVP23B-006) 18781111-18805895 nonsense_mediated_decay
ENST00000575261 (TVP23B-008) 18781180-18804263 protein_coding
ENST00000581733 (TVP23B-011) 18789035-18806202 protein_coding
ENST00000582288 (TVP23B-010) 18781287-18789669 retained_intron
ENSG00000171931 (FBXW10)
F-box and WD repeat domain containing 10 		ENST00000301938 (FBXW10-001) 18744075-18779349 protein_coding
ENST00000308799 (FBXW10-002) 18744026-18779349 protein_coding
ENST00000395665 (FBXW10-003) 18744024-18779349 protein_coding
ENST00000573605 (FBXW10-006) 18769477-18772634 processed_transcript
ENST00000574478 (FBXW10-005) 18744072-18779342 nonsense_mediated_decay

Homo sapiens Ensembl (GRCh38)

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CIL_00013W_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000090173-ENSMUSG00000014177 CGP 10090 11:62847069-62916780
GeneTranscriptPositionBiotype
ENSMUSG00000014177 (Tvp23b)
trans-golgi network vesicle protein 23B 		ENSMUST00000014321 (Tvp23b-001) 62879455-62895185 protein_coding
ENSMUST00000128698 (Tvp23b-002) 62879490-62892052 processed_transcript
ENSMUST00000140377 (Tvp23b-004) 62883662-62916780 processed_transcript
ENSMUST00000154176 (Tvp23b-003) 62879614-62885346 processed_transcript
ENSMUSG00000047821 (Trim16)
tripartite motif-containing 16 		ENSMUST00000055006 (Trim16-001) 62820231-62842936 protein_coding
ENSMUST00000072639 (Trim16-004) 62820253-62850808 protein_coding
ENSMUST00000108703 (Trim16-002) 62820469-62842936 protein_coding
ENSMUST00000128623 (Trim16-005) 62833800-62841457 processed_transcript
ENSMUST00000147942 (Trim16-003) 62820440-62821245 processed_transcript
ENSMUSG00000090173 (Fbxw10)
F-box and WD-40 domain protein 10 		ENSMUST00000036085 (Fbxw10-002) 62847069-62877465 protein_coding
ENSMUST00000127646 (Fbxw10-003) 62874859-62876753 processed_transcript
ENSMUST00000150989 (Fbxw10-201) 62847123-62877462 protein_coding
ENSMUST00000175804 (Fbxw10-005) 62847128-62851315 retained_intron
ENSMUST00000176577 (Fbxw10-001) 62847132-62877443 protein_coding
ENSMUST00000177336 (Fbxw10-004) 62847123-62877462 nonsense_mediated_decay

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00013W_0001ENSG00000171928ENST00000307767ENST00000476139ENST00000482741ENST00000571018ENST00000572845ENST00000574226ENST00000574294ENST00000575261ENST00000581733ENST00000582288ENSG00000171931ENST00000301938ENST00000308799ENST00000395665ENST00000573605ENST00000574478CIL_00013W_0002ENSMUSG00000014177ENSMUST00000014321ENSMUST00000128698ENSMUST00000140377ENSMUST00000154176ENSMUSG00000047821ENSMUST00000055006ENSMUST00000072639ENSMUST00000108703ENSMUST00000128623ENSMUST00000147942ENSMUSG00000090173ENSMUST00000036085ENSMUST00000127646ENSMUST00000150989ENSMUST00000175804ENSMUST00000176577ENSMUST00000177336
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00013W_0001ENSG00000171928ENST00000307767ENST00000476139ENST00000482741ENST00000574226ENST00000574294ENST00000575261ENST00000581733ENSG00000171931ENST00000301938ENST00000308799ENST00000395665ENST00000573605ENST00000574478CIL_00013W_0002ENSMUSG00000014177ENSMUST00000014321ENSMUST00000128698ENSMUSG00000047821ENSMUST00000055006ENSMUST00000072639ENSMUST00000108703ENSMUST00000128623ENSMUST00000147942ENSMUSG00000090173ENSMUST00000036085ENSMUST00000127646ENSMUST00000150989ENSMUST00000176577ENSMUST00000177336
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000171928 ENST00000307767 1.383±0.00 1.127±0.00 N/A 1.725±1.35 0.814±0.17 0.931±0.20 0.855±0.14 1.875±1.02 2.187±0.83 1.310±0.26 0.483±0.00 1.836±1.14 1.250±0.25 2.071±0.77
ENST00000476139 N/A N/A 0.269±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.339±0.00
ENST00000482741 0.188±0.00 0.711±0.00 0.526±0.00 0.408±0.16 0.720±0.46 0.794±0.00 0.198±0.07 0.456±0.00 0.466±0.00 N/A 0.072±0.00 0.213±0.00 N/A 0.314±0.00
ENST00000571018 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000572845 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000574226 N/A N/A N/A N/A 1.228±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000574294 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.347±0.00 N/A N/A N/A
ENST00000575261 N/A N/A N/A N/A 1.623±0.00 N/A N/A N/A N/A N/A N/A 3.665±0.00 1.503±0.00 3.095±0.00
ENST00000581733 1.523±0.00 1.769±0.00 1.854±0.00 2.152±0.00 1.234±0.41 3.330±1.32 1.425±0.46 5.209±0.00 1.639±0.32 3.246±1.29 N/A 2.824±1.20 1.084±0.23 3.951±2.19
ENST00000582288 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000171931 ENST00000301938 0.013±0.00 N/A N/A 0.014±0.00 N/A N/A N/A N/A N/A 0.127±0.00 N/A N/A N/A N/A
ENST00000308799 N/A N/A N/A N/A 0.013±0.00 N/A N/A N/A 0.011±0.00 N/A N/A 0.013±0.01 N/A 3.258±0.00
ENST00000395665 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.626±0.55
ENST00000573605 0.202±0.00 0.847±0.00 0.304±0.00 0.689±0.00 0.714±0.00 0.246±0.00 0.425±0.20 N/A 0.216±0.00 0.180±0.00 N/A 0.111±0.07 N/A 3.143±0.00
ENST00000574478 0.012±0.00 N/A N/A N/A N/A N/A N/A 0.013±0.00 N/A 0.015±0.00 N/A 0.007±0.00 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000014177 ENSMUST00000014321 11.668±0.88 5.871±0.63 21.924±3.50 6.877±3.75 6.684±1.00 15.022±1.86 6.596±0.32 16.319±1.82 11.685±2.24 15.899±2.06 1.629±0.45 11.062±4.33 13.418±7.92 9.238±2.65
ENSMUST00000128698 N/A 1.524±0.70 N/A N/A 2.755±0.50 4.150±0.71 2.207±0.00 N/A 2.052±0.00 3.462±0.00 N/A 2.481±0.31 N/A 7.313±0.53
ENSMUST00000140377 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000154176 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000047821 ENSMUST00000055006 3.904±0.59 1.055±0.32 7.987±1.13 1.190±0.27 2.865±0.89 18.164±4.33 1.740±0.30 1.228±0.41 0.246±0.12 13.113±3.82 7.780±1.66 1.654±0.75 1.155±0.83 N/A
ENSMUST00000072639 N/A 0.667±0.35 N/A N/A N/A 9.648±3.62 N/A N/A 0.040±0.00 N/A N/A 0.762±0.01 0.293±0.00 N/A
ENSMUST00000108703 1.848±0.00 N/A 2.275±0.43 0.146±0.00 2.570±2.55 5.300±1.03 0.568±0.19 0.417±0.00 0.098±0.04 5.525±1.69 3.822±0.46 1.091±0.52 0.819±0.30 N/A
ENSMUST00000128623 N/A 0.324±0.00 N/A 0.479±0.00 N/A N/A N/A N/A 0.024±0.00 N/A N/A 1.400±0.00 1.166±0.41 N/A
ENSMUST00000147942 N/A 0.544±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000090173 ENSMUST00000036085 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 14.062±0.93
ENSMUST00000127646 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 188.529±0.00
ENSMUST00000150989 N/A N/A N/A 0.263±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 28.923±7.83
ENSMUST00000175804 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000176577 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.640±0.00 N/A N/A
ENSMUST00000177336 N/A N/A N/A N/A 0.528±0.00 N/A N/A N/A 0.037±0.02 N/A N/A 0.535±0.22 N/A 7.873±1.87

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