C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: spectrin, beta, non-erythrocytic 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000173898 SPTBN2 9606 - 11:66685248-66729226 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000309996 SPTBN2-201 66685250-66721399 protein_coding
  ENST00000527010 SPTBN2-004 66715354-66729226 protein_coding
  ENST00000528051 SPTBN2-008 66685652-66686517 retained_intron
  ENST00000529997 SPTBN2-003 66685252-66721240 protein_coding
  ENST00000530665 SPTBN2-010 66694335-66698807 retained_intron
  ENST00000530775 SPTBN2-009 66686793-66687524 retained_intron
  ENST00000532650 SPTBN2-007 66687612-66688917 retained_intron
  ENST00000532902 SPTBN2-006 66688821-66690358 retained_intron
  ENST00000533211 SPTBN2-001 66685248-66728959 protein_coding
  ENST00000611817 SPTBN2-202 66685829-66721370 protein_coding
  ENST00000617502 SPTBN2-203 66685250-66721399 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000309996ENST00000529997ENST00000530665ENST00000530775ENST00000532650ENST00000532902ENST00000533211ENST00000611817ENST00000617502
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000309996 1.133±0.00 0.356±0.00 4.861±0.00 9.832±0.00 1.279±0.00 0.356±0.09 N/A 6.419±5.15 2.366±2.20 0.516±0.00 0.036±0.00 1.819±1.12 0.453±0.07 36.814±19.01
ENST00000529997 N/A N/A N/A N/A 0.397±0.00 0.065±0.00 0.073±0.00 N/A 0.083±0.00 0.202±0.00 N/A 0.629±0.00 0.243±0.00 N/A
ENST00000530665 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.325±0.00 N/A N/A N/A
ENST00000530775 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.355±0.00 N/A N/A N/A
ENST00000532650 N/A N/A N/A 28.807±0.00 1.248±0.00 0.908±0.00 N/A 11.384±0.00 N/A N/A N/A N/A N/A N/A
ENST00000532902 N/A N/A N/A N/A 1.657±0.00 N/A 0.369±0.00 N/A N/A N/A N/A 28.865±0.00 N/A N/A
ENST00000533211 N/A N/A 1.064±0.00 7.258±5.30 N/A N/A N/A N/A N/A N/A N/A 0.707±0.00 0.096±0.00 N/A
ENST00000611817 N/A N/A N/A N/A 0.348±0.00 0.298±0.00 0.063±0.00 2.394±0.00 N/A N/A N/A N/A N/A N/A
ENST00000617502 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.233±0.00 N/A N/A N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003779 IEA actin binding
GO:0005200 TAS:IEA structural constituent of cytoskeleton
GO:0005515 IEA protein binding
GO:0005543 IEA phospholipid binding
GO:0005615 IDA extracellular space
GO:0005829 TAS cytosol
GO:0007411 TAS axon guidance
GO:0007416 IEA synapse assembly
GO:0008091 IDA:IEA spectrin
GO:0008219 IEA cell death
GO:0016192 IDA vesicle-mediated transport
GO:0016324 IEA apical plasma membrane
GO:0019886 TAS antigen processing and presentation of exogenous peptide antigen via MHC class II
GO:0021692 IEA cerebellar Purkinje cell layer morphogenesis
GO:0030534 IEA adult behavior
GO:0035264 IEA multicellular organism growth
GO:0043025 IEA neuronal cell body
GO:0051693 IEA actin filament capping

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000053956 sptbn2 spectrin, beta, non-erythrocytic 2 protein_coding Danio_rerio
ENSMUSG00000067889 Sptbn2 spectrin beta, non-erythrocytic 2 protein_coding Mus_musculus

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