C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: spectrin, beta, non-erythrocytic 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000309996 SPTBN2-201 ENSG00000173898 9606 - 11:66685250-66721399 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENST00000309996
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000309996 1.133±0.00 0.356±0.00 4.861±0.00 9.832±0.00 1.279±0.00 0.356±0.09 6.419±5.15 2.366±2.20 0.516±0.00 0.036±0.00 1.819±1.12 0.453±0.07 36.814±19.01

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003779 IEA actin binding
GO:0005200 TAS:IEA structural constituent of cytoskeleton
GO:0005515 IEA protein binding
GO:0005543 IEA phospholipid binding
GO:0005615 IDA extracellular space
GO:0005829 TAS cytosol
GO:0007411 TAS axon guidance
GO:0008091 IDA:IEA spectrin
GO:0008219 IEA cell death
GO:0016192 IDA vesicle-mediated transport
GO:0019886 TAS antigen processing and presentation of exogenous peptide antigen via MHC class II
GO:0051693 IEA actin filament capping

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000008991 Sptbn2-201 protein_coding Mus_musculus 0 8656
ENSDART00000149151 sptbn2-001 protein_coding Danio_rerio 0 1011
ENSDART00000098492 protein_coding Danio_rerio 0 992
ENSDART00000097723 sptbn2-201 protein_coding Danio_rerio 0 950
ENSMUST00000166101 Sptb-002 protein_coding Mus_musculus 0 736
ENSMUST00000021458 Sptb-001 protein_coding Mus_musculus 0 736
ENSMUST00000172269 Sptbn4-201 protein_coding Mus_musculus 0 586
ENSMUST00000011895 Sptbn4-001 protein_coding Mus_musculus 0 586
ENSMUST00000152572 Sptbn4-002 protein_coding Mus_musculus 1e-24 121
ENSMUST00000138087 Sptbn4-007 processed_transcript Mus_musculus 2e-17 97

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