C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: small nuclear RNA activating complex, polypeptide 5, 19kDa
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000174446 SNAPC5 9606 - 15:66490135-66497813 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000307979 SNAPC5-003 66493880-66497762 protein_coding
  ENST00000316634 SNAPC5-001 66493813-66497813 protein_coding
  ENST00000395589 SNAPC5-008 66490306-66497750 protein_coding
  ENST00000562411 SNAPC5-007 66490636-66497780 nonsense_mediated_decay
  ENST00000563480 SNAPC5-006 66490135-66497750 protein_coding
  ENST00000565465 SNAPC5-005 66493844-66497759 nonsense_mediated_decay
  ENST00000566658 SNAPC5-009 66494228-66497738 protein_coding
  ENST00000568875 SNAPC5-002 66493468-66497780 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonHeartLiverMuscleOvaryTestisENST00000316634ENST00000395589ENST00000562411
Transcript ID Colon Heart Liver Muscle Ovary Testis
ENST00000316634 N/A N/A 2.513±0.00 6.318±4.21 14.715±1.96 17.164±7.10
ENST00000395589 3.565±0.00 18.189±0.00 13.338±0.00 N/A 4.271±0.00 N/A
ENST00000562411 N/A N/A N/A N/A N/A 16.385±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008Q7 CIL_0008Q7_0001 VISTA 15:66378983-66980203

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006366 IEA transcription from RNA polymerase II promoter
GO:0006383 TAS transcription from RNA polymerase III promoter
GO:0006384 IEA transcription initiation from RNA polymerase III promoter
GO:0010467 TAS gene expression

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000062476 snapc5 small nuclear RNA activating complex, polypeptide 5 protein_coding Danio_rerio
ENSMUSG00000032398 Snapc5 small nuclear RNA activating complex, polypeptide 5 protein_coding Mus_musculus

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