C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: small nuclear RNA activating complex, polypeptide 5, 19kDa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000395589 SNAPC5-008 ENSG00000174446 9606 - 15:66490306-66497750 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonHeartLiverOvaryENST00000395589
Transcript ID Colon Heart Liver Ovary
ENST00000395589 3.565±0.00 18.189±0.00 13.338±0.00 4.271±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008Q7 CIL_0008Q7_0001 VISTA 15:66378983-66980203

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006366 IEA transcription from RNA polymerase II promoter
GO:0006383 TAS transcription from RNA polymerase III promoter
GO:0006384 IEA transcription initiation from RNA polymerase III promoter
GO:0010467 TAS gene expression

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000034965 Snapc5-201 protein_coding Mus_musculus 0 209

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