C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RUN and FYVE domain containing 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000176783 RUFY1 9606 + 5:179550558-179610026 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000319449 RUFY1-001 179550558-179610026 protein_coding
  ENST00000393438 RUFY1-005 179559692-179610012 protein_coding
  ENST00000393448 RUFY1-003 179550836-179602571 nonsense_mediated_decay
  ENST00000437570 RUFY1-002 179559692-179610011 protein_coding
  ENST00000502434 RUFY1-012 179577113-179607628 protein_coding
  ENST00000502531 RUFY1-010 179596560-179606584 retained_intron
  ENST00000502984 RUFY1-006 179550838-179569382 protein_coding
  ENST00000503514 RUFY1-007 179559741-179567562 processed_transcript
  ENST00000503583 RUFY1-014 179606903-179609472 retained_intron
  ENST00000507569 RUFY1-008 179559692-179562922 retained_intron
  ENST00000508609 RUFY1-009 179562631-179594898 protein_coding
  ENST00000508797 RUFY1-015 179607266-179609970 processed_transcript
  ENST00000509797 RUFY1-013 179589363-179593613 retained_intron
  ENST00000514238 RUFY1-011 179567510-179590958 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000319449ENST00000393438ENST00000437570ENST00000502434ENST00000508609ENST00000508797ENST00000509797ENST00000514238
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000319449 9.011±0.00 9.648±0.00 N/A 1.846±0.87 7.243±2.60 6.125±2.65 3.631±2.56 8.344±5.67 5.751±1.04 3.743±1.75 8.788±0.00 6.376±4.16 9.825±3.63 9.889±0.00
ENST00000393438 N/A N/A 2.589±0.00 2.139±0.00 N/A N/A N/A N/A N/A N/A 1.594±0.00 4.589±3.75 7.647±5.74 2.092±0.00
ENST00000437570 N/A N/A 1.666±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 3.510±0.38 N/A 3.758±0.00
ENST00000502434 10.872±0.00 17.446±0.00 N/A 5.382±0.00 7.765±5.28 10.637±0.00 0.467±0.00 12.685±0.00 N/A N/A 2.704±1.95 12.780±0.00 N/A 16.082±0.00
ENST00000508609 N/A N/A N/A N/A 3.327±0.00 N/A 0.841±0.00 2.680±0.00 N/A 3.211±0.00 N/A 2.682±0.00 N/A N/A
ENST00000508797 N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.165±0.00 N/A N/A N/A N/A
ENST00000509797 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.255±0.00 17.973±0.00 9.311±0.00
ENST00000514238 N/A N/A N/A 2.830±0.00 N/A N/A N/A N/A N/A 7.303±0.00 N/A N/A N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005768 IEA endosome
GO:0006897 IEA endocytosis
GO:0008270 IEA zinc ion binding
GO:0008289 IEA lipid binding
GO:0008565 IEA protein transporter activity
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0030100 IEA regulation of endocytosis
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000078685 RUFY1 RUN and FYVE domain containing 1 protein_coding Danio_rerio
ENSMUSG00000020375 Rufy1 RUN and FYVE domain containing 1 protein_coding Mus_musculus

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