C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SEC24 family member C
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000176986 SEC24C 9606 + 10:73744384-73772161 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000339365 SEC24C-002 73744391-73772161 protein_coding
  ENST00000345254 SEC24C-001 73744384-73772161 protein_coding
  ENST00000465076 SEC24C-003 73744384-73772159 nonsense_mediated_decay
  ENST00000477008 SEC24C-004 73746867-73752102 processed_transcript
  ENST00000496827 SEC24C-005 73767894-73770379 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000339365ENST00000345254ENST00000496827
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000339365 N/A N/A 1.106±0.00 N/A N/A 1.505±0.00 1.130±0.00 N/A 3.371±0.00 N/A 1.504±0.00 N/A N/A N/A
ENST00000345254 9.177±0.00 6.082±0.00 1.193±0.00 3.639±1.14 4.214±0.00 3.720±1.20 3.428±2.45 3.975±0.00 6.547±0.00 4.945±3.14 5.107±3.78 8.145±3.50 9.970±4.66 6.219±0.80
ENST00000496827 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 21.208±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001H4 CIL_0001H4_0001 CGP 10:73744384-73780251

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000139 TAS Golgi membrane
GO:0002474 TAS antigen processing and presentation of peptide antigen via MHC class I
GO:0003674 ND molecular_function
GO:0005515 IPI protein binding
GO:0005789 TAS endoplasmic reticulum membrane
GO:0005829 TAS cytosol
GO:0006886 IEA intracellular protein transport
GO:0006888 NAS:IEA ER to Golgi vesicle-mediated transport
GO:0008270 IEA zinc ion binding
GO:0012507 TAS ER to Golgi transport vesicle membrane
GO:0018279 TAS protein N-linked glycosylation via asparagine
GO:0019886 TAS antigen processing and presentation of exogenous peptide antigen via MHC class II
GO:0030127 NAS:IEA COPII vesicle coat
GO:0043687 TAS post-translational protein modification
GO:0044267 TAS cellular protein metabolic process
GO:0044281 TAS small molecule metabolic process
GO:0048208 TAS COPII vesicle coating
GO:0061024 TAS membrane organization

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000060575 sec24c SEC24 family, member C (S. cerevisiae) protein_coding Danio_rerio
ENSMUSG00000039367 Sec24c Sec24 related gene family, member C (S. cerevisiae) protein_coding Mus_musculus

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