C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: chromosome 12 open reading frame 54
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000177627 C12orf54 9606 + 12:48482503-48496512 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000314014 C12orf54-201 48482503-48496512 protein_coding
  ENST00000380491 C12orf54-002 48483261-48496341 nonsense_mediated_decay
  ENST00000548364 C12orf54-001 48483240-48496384 protein_coding
  ENST00000548913 C12orf54-005 48486708-48488500 processed_transcript
  ENST00000549398 C12orf54-004 48490812-48496386 nonsense_mediated_decay
  ENST00000551266 C12orf54-003 48492894-48496386 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000314014ENST00000548364ENST00000548913ENST00000549398ENST00000551266
Transcript ID Adipose Adrenal Brain Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000314014 N/A N/A N/A N/A N/A N/A N/A N/A 0.080±0.00 0.047±0.00 10.918±0.75
ENST00000548364 N/A N/A N/A N/A 0.081±0.00 N/A N/A 0.144±0.00 N/A N/A 10.429±3.14
ENST00000548913 0.044±0.00 N/A N/A 0.097±0.00 N/A 0.050±0.00 0.066±0.00 N/A 0.380±0.00 0.076±0.00 N/A
ENST00000549398 N/A 0.103±0.00 N/A N/A N/A N/A N/A N/A 0.309±0.00 N/A N/A
ENST00000551266 0.126±0.00 N/A 0.391±0.00 N/A N/A 0.170±0.00 0.114±0.00 N/A 0.157±0.00 0.121±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00068L CIL_00068L_0001 CGP 12:48482503-48529897

Gene Ontology
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000099353 RIKEN cDNA 1700031M16 gene protein_coding Mus_musculus

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