C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: sorting nexin 18
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000178996 SNX18 9606 + 5:54517759-54546585 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000326277 SNX18-001 54517759-54519910 protein_coding
  ENST00000343017 SNX18-201 54517759-54546585 protein_coding
  ENST00000381410 SNX18-002 54517763-54546585 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000326277ENST00000381410
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000326277 N/A N/A 1.807±0.00 N/A N/A N/A 0.924±0.00 N/A N/A N/A 0.450±0.00 0.787±0.00 N/A N/A
ENST00000381410 9.541±0.00 6.467±0.00 2.685±0.00 3.884±1.34 6.566±3.05 6.244±3.26 2.343±1.24 5.484±2.76 5.570±1.43 6.348±0.03 1.657±1.14 6.545±4.19 9.344±0.89 6.266±2.82

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000281 IMP mitotic cytokinesis
GO:0005515 IPI:IEA protein binding
GO:0005546 IDA phosphatidylinositol-4,5-bisphosphate binding
GO:0005768 IBA endosome
GO:0006886 IBA intracellular protein transport
GO:0006897 IDA endocytosis
GO:0007067 IEA mitotic nuclear division
GO:0015031 IEA protein transport
GO:0016023 IDA cytoplasmic membrane-bounded vesicle
GO:0016197 IMP endosomal transport
GO:0030136 IDA clathrin-coated vesicle
GO:0030426 IEA growth cone
GO:0031234 IDA extrinsic component of cytoplasmic side of plasma membrane
GO:0035091 IEA phosphatidylinositol binding
GO:0036089 IMP cleavage furrow formation
GO:0043025 IEA neuronal cell body
GO:0043547 IDA positive regulation of GTPase activity
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000044246 snx18b sorting nexin 18b protein_coding Danio_rerio
ENSDARG00000067713 snx18a sorting nexin 18a protein_coding Danio_rerio
ENSMUSG00000042364 Snx18 sorting nexin 18 protein_coding Mus_musculus

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